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The map label for this gene is raiA [H]

Identifier: 145299723

GI number: 145299723

Start: 3000069

End: 3000407

Strand: Direct

Name: raiA [H]

Synonym: ASA_2799

Alternate gene names: 145299723

Gene position: 3000069-3000407 (Clockwise)

Preceding gene: 145299716

Following gene: 145299727

Centisome position: 63.8

GC content: 53.98

Gene sequence:

>339_bases
ATGAAAATCGAAATTACCAGCAAAATCATCGACATTACCCCGGCTATCCGCGAGCGCATTGAATCCCGCTTTGAAAAGCT
CGAACGTCTTCAGGTGCCTCTCATCACACCTCATGTGATTGTCTCCAAAGAGCGTCTGATGTTCATCATTGAAGCCACTG
CTGGCATCCCCAACGGCAAACTGTTTGCCCAGGCAGAACACGAGGATCTCTACGCCGCCATCACTGAACTGGGGCAAAAG
CTGGAGCGTCAGCTCACCCGTCACATCGAAAAACCCATTGCCCGTCGGGCGGCGGCCAGTGCCAAGGAAATTCCCCAGCC
GGACGAAGCCGACGCATAA

Upstream 100 bases:

>100_bases
TAGTAAAGGGCTCATTTCGTGACCCAGATCACATTTCATTATTCCCCCATGAGTAATCTGAAGGTGAAGACACAAGCAAG
ACGACCCGAAGGGGGCCAAT

Downstream 100 bases:

>100_bases
TCCGCAATCACATCAATTCGAATTCAAAGGCGGGATCTTCCCGCCTTTTTGCATGCTGACTTTGGTACGATCCCCTTCAT
GCTTGTGCCGCTGTCCTCAA

Product: ribosome-associated protein Y

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 112; Mature: 112

Protein sequence:

>112_residues
MKIEITSKIIDITPAIRERIESRFEKLERLQVPLITPHVIVSKERLMFIIEATAGIPNGKLFAQAEHEDLYAAITELGQK
LERQLTRHIEKPIARRAAASAKEIPQPDEADA

Sequences:

>Translated_112_residues
MKIEITSKIIDITPAIRERIESRFEKLERLQVPLITPHVIVSKERLMFIIEATAGIPNGKLFAQAEHEDLYAAITELGQK
LERQLTRHIEKPIARRAAASAKEIPQPDEADA
>Mature_112_residues
MKIEITSKIIDITPAIRERIESRFEKLERLQVPLITPHVIVSKERLMFIIEATAGIPNGKLFAQAEHEDLYAAITELGQK
LERQLTRHIEKPIARRAAASAKEIPQPDEADA

Specific function: During environmental stress such as cold shock or excessive cell density at stationary phase, stabilizes the 70S ribosome against dissociation, inhibits translation initiation and increase translation accuracy. When normal growth conditions are restored,

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

Organism=Escherichia coli, GI1788949, Length=103, Percent_Identity=52.4271844660194, Blast_Score=106, Evalue=4e-25,
Organism=Escherichia coli, GI1789595, Length=91, Percent_Identity=37.3626373626374, Blast_Score=65, Evalue=9e-13,

Paralogues:

None

Copy number: 600 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 12678; Mature: 12678

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIEITSKIIDITPAIRERIESRFEKLERLQVPLITPHVIVSKERLMFIIEATAGIPNGK
CEEEHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHEECHHHEEEEEECCCCCCCCC
LFAQAEHEDLYAAITELGQKLERQLTRHIEKPIARRAAASAKEIPQPDEADA
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKIEITSKIIDITPAIRERIESRFEKLERLQVPLITPHVIVSKERLMFIIEATAGIPNGK
CEEEHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHEECHHHEEEEEECCCCCCCCC
LFAQAEHEDLYAAITELGQKLERQLTRHIEKPIARRAAASAKEIPQPDEADA
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]