Click here to switch to the map view.

The map label for this gene is yhjC [C]

Identifier: 145299672

GI number: 145299672

Start: 2946649

End: 2947551

Strand: Direct

Name: yhjC [C]

Synonym: ASA_2747

Alternate gene names: 145299672

Gene position: 2946649-2947551 (Clockwise)

Preceding gene: 145299667

Following gene: 145299674

Centisome position: 62.66

GC content: 62.68

Gene sequence:

>903_bases
ATGGACCAGATAGCCGCCATGCGCACCTTCATCAAGGTGGTGGAATGTCAGAGTTTTACCAAGGCCGCCAACCAGCTCGG
CATCTCGGTCGCCATGACCTCCAAGCTGATGCAGCAACTGGAGGAGTCCCTCTCCACCCGCTTGCTGTCGCGCACCACCC
GTCAGGTCAACCCCACTGAGGCGGGACAGTTCTACTACCAGCGCTCCCAGGCCCTGCTGGCAGAGCTGGAAGAGACCCAC
AGCCAGCTCACCCGCAACAACCAGCAGCCCCAGGGCACCCTCAAGCTGTCAGTGCCGATGGACTTTGGCTACCTGCATCT
CTCCCCTGCCCTGCCGCTGTTTCGTGAACGCTTCCCGGATCTGAAACTGGAAATAGAGTACAGCGACCGGCGGGTGGCCC
TGGTGGAAGAGGGGTTCGATCTGGCGCTGCGCATCGGCAACCTGCCGGACTCTTCTCTGGTCGCCAAGCCGCTGGCCATG
ATGAAGCTGGAGGTATGTGCCAGCCCCACCTATCTGGCCCGCAGGGGCACCCCGAACAGCCCCGAGGATCTCAAGCAGCA
CGACTGCCTCATCTATACCCTGACCCAACCTGACTGGGTCTTCAAGCAGGGAGGAGAACAGCTGAGCGTGCGCCCGCAGG
GACCACTTCGGGCCAACAATGGCGTGGCCCTGACCCGGGCCGCCTGCGATCATCAGGGCATTATCTTGCAGCCCACCTTC
ATCGTCGGGGATGCGCTGCGTTCGGGGGAGCTGGTCCCCTTGCTGCCGGAGTGGGAGAAGGGGCAGGTGGGGCTCTATGC
CCTCTACCCTCATCGCCGATTCGTCTCCGGCAAGGTGCGCTGCTTTATCGAGTTCGTGCAGGAGCGCTACCTGGCCCCTC
ACTACTGGGATCGCAAAGCGTGA

Upstream 100 bases:

>100_bases
CTTCATATTGGGGGTTCACAACAACAACCAAGATGCTAACCTCCATATCGGAATAGATAATCAGCGATTTATTAAAATAA
TTATCAACTGAGAGTGAAAG

Downstream 100 bases:

>100_bases
GCCAGTGCCGGAATTTATGATGCAGAGGTGTCGGACTGTGGGGATGCAGGTGCGGCGGGCAACGGCAGCTCGGCCACCAG
CAGTTGATCGGTCTGCGTTA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MDQIAAMRTFIKVVECQSFTKAANQLGISVAMTSKLMQQLEESLSTRLLSRTTRQVNPTEAGQFYYQRSQALLAELEETH
SQLTRNNQQPQGTLKLSVPMDFGYLHLSPALPLFRERFPDLKLEIEYSDRRVALVEEGFDLALRIGNLPDSSLVAKPLAM
MKLEVCASPTYLARRGTPNSPEDLKQHDCLIYTLTQPDWVFKQGGEQLSVRPQGPLRANNGVALTRAACDHQGIILQPTF
IVGDALRSGELVPLLPEWEKGQVGLYALYPHRRFVSGKVRCFIEFVQERYLAPHYWDRKA

Sequences:

>Translated_300_residues
MDQIAAMRTFIKVVECQSFTKAANQLGISVAMTSKLMQQLEESLSTRLLSRTTRQVNPTEAGQFYYQRSQALLAELEETH
SQLTRNNQQPQGTLKLSVPMDFGYLHLSPALPLFRERFPDLKLEIEYSDRRVALVEEGFDLALRIGNLPDSSLVAKPLAM
MKLEVCASPTYLARRGTPNSPEDLKQHDCLIYTLTQPDWVFKQGGEQLSVRPQGPLRANNGVALTRAACDHQGIILQPTF
IVGDALRSGELVPLLPEWEKGQVGLYALYPHRRFVSGKVRCFIEFVQERYLAPHYWDRKA
>Mature_300_residues
MDQIAAMRTFIKVVECQSFTKAANQLGISVAMTSKLMQQLEESLSTRLLSRTTRQVNPTEAGQFYYQRSQALLAELEETH
SQLTRNNQQPQGTLKLSVPMDFGYLHLSPALPLFRERFPDLKLEIEYSDRRVALVEEGFDLALRIGNLPDSSLVAKPLAM
MKLEVCASPTYLARRGTPNSPEDLKQHDCLIYTLTQPDWVFKQGGEQLSVRPQGPLRANNGVALTRAACDHQGIILQPTF
IVGDALRSGELVPLLPEWEKGQVGLYALYPHRRFVSGKVRCFIEFVQERYLAPHYWDRKA

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=301, Percent_Identity=35.8803986710963, Blast_Score=170, Evalue=1e-43,
Organism=Escherichia coli, GI1786401, Length=282, Percent_Identity=34.3971631205674, Blast_Score=164, Evalue=9e-42,
Organism=Escherichia coli, GI1789639, Length=294, Percent_Identity=33.6734693877551, Blast_Score=157, Evalue=6e-40,
Organism=Escherichia coli, GI1789440, Length=283, Percent_Identity=31.4487632508834, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI87081978, Length=294, Percent_Identity=34.3537414965986, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1787128, Length=280, Percent_Identity=29.2857142857143, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI1787589, Length=290, Percent_Identity=30, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1789173, Length=288, Percent_Identity=26.7361111111111, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1788706, Length=259, Percent_Identity=28.957528957529, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786448, Length=283, Percent_Identity=25.0883392226148, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787879, Length=164, Percent_Identity=31.0975609756098, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87082132, Length=304, Percent_Identity=24.6710526315789, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI145693105, Length=161, Percent_Identity=26.0869565217391, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI157672245, Length=152, Percent_Identity=28.9473684210526, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33979; Mature: 33979

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQIAAMRTFIKVVECQSFTKAANQLGISVAMTSKLMQQLEESLSTRLLSRTTRQVNPTE
CCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
AGQFYYQRSQALLAELEETHSQLTRNNQQPQGTLKLSVPMDFGYLHLSPALPLFRERFPD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEECCCCHHHHHHCCC
LKLEIEYSDRRVALVEEGFDLALRIGNLPDSSLVAKPLAMMKLEVCASPTYLARRGTPNS
EEEEEEECCCEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCC
PEDLKQHDCLIYTLTQPDWVFKQGGEQLSVRPQGPLRANNGVALTRAACDHQGIILQPTF
HHHHHHCCEEEEEECCCCHHHHCCCCEEEECCCCCCCCCCCEEEEEECCCCCCEEEECHH
IVGDALRSGELVPLLPEWEKGQVGLYALYPHRRFVSGKVRCFIEFVQERYLAPHYWDRKA
EEECHHCCCCEEEECCCCCCCCEEEEEECCCCHHHCHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MDQIAAMRTFIKVVECQSFTKAANQLGISVAMTSKLMQQLEESLSTRLLSRTTRQVNPTE
CCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
AGQFYYQRSQALLAELEETHSQLTRNNQQPQGTLKLSVPMDFGYLHLSPALPLFRERFPD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEECCCCHHHHHHCCC
LKLEIEYSDRRVALVEEGFDLALRIGNLPDSSLVAKPLAMMKLEVCASPTYLARRGTPNS
EEEEEEECCCEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCC
PEDLKQHDCLIYTLTQPDWVFKQGGEQLSVRPQGPLRANNGVALTRAACDHQGIILQPTF
HHHHHHCCEEEEEECCCCHHHHCCCCEEEECCCCCCCCCCCEEEEEECCCCCCEEEECHH
IVGDALRSGELVPLLPEWEKGQVGLYALYPHRRFVSGKVRCFIEFVQERYLAPHYWDRKA
EEECHHCCCCEEEECCCCCCCCEEEEEECCCCHHHCHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]