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The map label for this gene is yciR [C]

Identifier: 145299459

GI number: 145299459

Start: 2690389

End: 2691972

Strand: Direct

Name: yciR [C]

Synonym: ASA_2522

Alternate gene names: 145299459

Gene position: 2690389-2691972 (Clockwise)

Preceding gene: 145299453

Following gene: 145299461

Centisome position: 57.21

GC content: 59.53

Gene sequence:

>1584_bases
ATGAAGAGATACTTGCTTTGGTTACTGCTGATTGGCGCCAGTTATATCGGGCCCCTCCTGGCCAATGAATCCTCCCTTGA
AGCCCCGGAGCGGGTGGTGCTCCAGTTGCGCTGGCTGCACCAGCCCCAGTTTGTGGGCTATCACATGGCCAAGGCCAAGG
GCTTCTATGCCAAAGCCGGACTGGACGTGGAGATAAGGCCTGGTGGCAAGGGAATAAGCCCGGTGGACGAGGTGCAAAGC
GGTCGTGCCGACTTTGGCGTCGGCAACACAGAGGTGCTGACCGCCTATGCCAATGGCAAGCCACTGCTGGCGCTCGCCTG
CGTCTTTCAGCACTCGCCGTCCATCTTCCTGGCCCGTCGTGACAGCGGCATTCTCACTGTTGATGGCATGCGTGGCAAAC
GGATCATGATGTTTTCCGCCCATCAGGATGCCGAGTTGCTGGCGACACTTTTCTATCAAGGTCTCAATGAAAGCCAACTT
ACCCCGATCCAGACCTCGGTCAATATCGATGATCTCATCGAGGGCAGGGTCGATATCTTCAACGCCTATCTCAGCAACGA
GCCTTTCTATCTGGAAGAGCGCGGCATTCCCGTCTCCGTCATCAACCCGCGCAATTACGGCATCGACTTTTACAGCGACA
TACTCTTCACCACTCAGGCGCAGGAGCAGGCCCATCCGGGCAGGGTAGAGCGGTTTCGGACCGCCAGCCTTGAAGGCTGG
CGCTATGCCCTCGCCCATCCCCAGGAGGCCATCGCCCTGCTGCGCAGTGAATACGGCGTCAACCGCAGTCAGGCTCACAT
GGAGTAGGAGCTGCAGGTAAGCAAGGAGATGATACAACCGCTCTATGTGGAGATCGGGTATATGAACCCGGATCGCGTCA
CCCACATCATGGAGCAGCTGGCCGAAATCGGGCTCATCAAGCGACCCGTGCCGCTGACTGACTTTCTCTATCAGGCCCCC
TCCGAGCAGTGGGTATTCTGGCGTCCCTGGTTTTTGCTGAGTCTGGCCGCCTGCGTGCTCATATTGCTGCTGGCGGTCTA
CCTGCTGGTGTGCAACAAACGGCTCAATCGCGAGATTGCCCTGCGCCAGCAGCGGGAAGAGGAGATATTGCAGCTGGCAA
GGCAGGACCCGCTCACCGGCCTGCCCAACCGTCTGAGCCTGATGGAGCGGCTGGAGGCGCAGATAAGCAGCCCCAACCCC
GGCTGCCTGCTGTTTTGTGATCTCAACAACTTCAAACAGGTCAACGACGGCTTTGGCCACAGCCATGGTGATGCCATCCT
CTGCCAGCTGGCGGAGCGGATAACCCGCAGCCTCAACCACCAGCGCTTCTTCGCCAGACTGGCCGGTGACGAGTTCGTGC
TGCTGCTCCCCGATCACGACCTGCTCGATGCCGAGGCCATTGCCGAGGTGATTAGAATGGCCATGGCCCAGCCATTTCAG
GTCAAGGAGCATCAACTCGAGGTTGGCATCAGCGTCGGGGTCAGCCAATACCAGCCGGGCTGGCGTGCCGAGCAGTGGCT
TATCCACGCCGATCGCGCCATGTACAACGACAAGGGGATCGAGCTGGCGGTGGCGCCCCCCTAA

Upstream 100 bases:

>100_bases
TCCGGTACATCTATAACCTTTTAGAATGTGTTTCATTACAAGAATATGACTCCATCAAGGGGTCGCCCCCCCATGAATAC
TCAGAACAAGAATCGCACGG

Downstream 100 bases:

>100_bases
GCCCTTCATCTTGGCACGGTCAGCCTGGCTTGCACCTCACAACATCACGCTGGCAGCACCAAGGCGCAGGGCAGTACAAG
GCAACAAGGCCACCGCTATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 527; Mature: 527

Protein sequence:

>527_residues
MKRYLLWLLLIGASYIGPLLANESSLEAPERVVLQLRWLHQPQFVGYHMAKAKGFYAKAGLDVEIRPGGKGISPVDEVQS
GRADFGVGNTEVLTAYANGKPLLALACVFQHSPSIFLARRDSGILTVDGMRGKRIMMFSAHQDAELLATLFYQGLNESQL
TPIQTSVNIDDLIEGRVDIFNAYLSNEPFYLEERGIPVSVINPRNYGIDFYSDILFTTQAQEQAHPGRVERFRTASLEGW
RYALAHPQEAIALLRSEYGVNRSQAHMEWELQVSKEMIQPLYVEIGYMNPDRVTHIMEQLAEIGLIKRPVPLTDFLYQAP
SEQWVFWRPWFLLSLAACVLILLLAVYLLVCNKRLNREIALRQQREEEILQLARQDPLTGLPNRLSLMERLEAQISSPNP
GCLLFCDLNNFKQVNDGFGHSHGDAILCQLAERITRSLNHQRFFARLAGDEFVLLLPDHDLLDAEAIAEVIRMAMAQPFQ
VKEHQLEVGISVGVSQYQPGWRAEQWLIHADRAMYNDKGIELAVAPP

Sequences:

>Translated_527_residues
MKRYLLWLLLIGASYIGPLLANESSLEAPERVVLQLRWLHQPQFVGYHMAKAKGFYAKAGLDVEIRPGGKGISPVDEVQS
GRADFGVGNTEVLTAYANGKPLLALACVFQHSPSIFLARRDSGILTVDGMRGKRIMMFSAHQDAELLATLFYQGLNESQL
TPIQTSVNIDDLIEGRVDIFNAYLSNEPFYLEERGIPVSVINPRNYGIDFYSDILFTTQAQEQAHPGRVERFRTASLEGW
RYALAHPQEAIALLRSEYGVNRSQAHME*ELQVSKEMIQPLYVEIGYMNPDRVTHIMEQLAEIGLIKRPVPLTDFLYQAP
SEQWVFWRPWFLLSLAACVLILLLAVYLLVCNKRLNREIALRQQREEEILQLARQDPLTGLPNRLSLMERLEAQISSPNP
GCLLFCDLNNFKQVNDGFGHSHGDAILCQLAERITRSLNHQRFFARLAGDEFVLLLPDHDLLDAEAIAEVIRMAMAQPFQ
VKEHQLEVGISVGVSQYQPGWRAEQWLIHADRAMYNDKGIELAVAPP
>Mature_527_residues
MKRYLLWLLLIGASYIGPLLANESSLEAPERVVLQLRWLHQPQFVGYHMAKAKGFYAKAGLDVEIRPGGKGISPVDEVQS
GRADFGVGNTEVLTAYANGKPLLALACVFQHSPSIFLARRDSGILTVDGMRGKRIMMFSAHQDAELLATLFYQGLNESQL
TPIQTSVNIDDLIEGRVDIFNAYLSNEPFYLEERGIPVSVINPRNYGIDFYSDILFTTQAQEQAHPGRVERFRTASLEGW
RYALAHPQEAIALLRSEYGVNRSQAHME*ELQVSKEMIQPLYVEIGYMNPDRVTHIMEQLAEIGLIKRPVPLTDFLYQAP
SEQWVFWRPWFLLSLAACVLILLLAVYLLVCNKRLNREIALRQQREEEILQLARQDPLTGLPNRLSLMERLEAQISSPNP
GCLLFCDLNNFKQVNDGFGHSHGDAILCQLAERITRSLNHQRFFARLAGDEFVLLLPDHDLLDAEAIAEVIRMAMAQPFQ
VKEHQLEVGISVGVSQYQPGWRAEQWLIHADRAMYNDKGIELAVAPP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=174, Percent_Identity=31.6091954022989, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788956, Length=166, Percent_Identity=31.9277108433735, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI87081977, Length=172, Percent_Identity=31.3953488372093, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI87081881, Length=177, Percent_Identity=30.5084745762712, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI87082007, Length=191, Percent_Identity=30.3664921465969, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788381, Length=153, Percent_Identity=36.6013071895425, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1787262, Length=104, Percent_Identity=37.5, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787802, Length=178, Percent_Identity=24.7191011235955, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI87081921, Length=157, Percent_Identity=26.7515923566879, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI87081974, Length=171, Percent_Identity=29.2397660818713, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787816, Length=151, Percent_Identity=29.8013245033113, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 59486; Mature: 59486

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRYLLWLLLIGASYIGPLLANESSLEAPERVVLQLRWLHQPQFVGYHMAKAKGFYAKAG
CHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCEEECC
LDVEIRPGGKGISPVDEVQSGRADFGVGNTEVLTAYANGKPLLALACVFQHSPSIFLARR
CEEEECCCCCCCCCHHHHHCCCCCCCCCCCEEEEEECCCCCCEEHHHHHHCCCCEEEEEC
DSGILTVDGMRGKRIMMFSAHQDAELLATLFYQGLNESQLTPIQTSVNIDDLIEGRVDIF
CCCEEEEECCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCEEECCCHHHHHHHHHHHH
NAYLSNEPFYLEERGIPVSVINPRNYGIDFYSDILFTTQAQEQAHPGRVERFRTASLEGW
HHHHCCCCEEEECCCCEEEEECCCCCCCHHHHHHHEEECCHHCCCCCHHHHHHHCCCCCC
RYALAHPQEAIALLRSEYGVNRSQAHMEELQVSKEMIQPLYVEIGYMNPDRVTHIMEQLA
EEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHH
EIGLIKRPVPLTDFLYQAPSEQWVFWRPWFLLSLAACVLILLLAVYLLVCNKRLNREIAL
HCCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
RQQREEEILQLARQDPLTGLPNRLSLMERLEAQISSPNPGCLLFCDLNNFKQVNDGFGHS
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHCCCCCCC
HGDAILCQLAERITRSLNHQRFFARLAGDEFVLLLPDHDLLDAEAIAEVIRMAMAQPFQV
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCC
KEHQLEVGISVGVSQYQPGWRAEQWLIHADRAMYNDKGIELAVAPP
CHHHEEEEHEECHHHCCCCCCHHHHEEEHHHHHCCCCCCEEEECCC
>Mature Secondary Structure
MKRYLLWLLLIGASYIGPLLANESSLEAPERVVLQLRWLHQPQFVGYHMAKAKGFYAKAG
CHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCEEECC
LDVEIRPGGKGISPVDEVQSGRADFGVGNTEVLTAYANGKPLLALACVFQHSPSIFLARR
CEEEECCCCCCCCCHHHHHCCCCCCCCCCCEEEEEECCCCCCEEHHHHHHCCCCEEEEEC
DSGILTVDGMRGKRIMMFSAHQDAELLATLFYQGLNESQLTPIQTSVNIDDLIEGRVDIF
CCCEEEEECCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCEEECCCHHHHHHHHHHHH
NAYLSNEPFYLEERGIPVSVINPRNYGIDFYSDILFTTQAQEQAHPGRVERFRTASLEGW
HHHHCCCCEEEECCCCEEEEECCCCCCCHHHHHHHEEECCHHCCCCCHHHHHHHCCCCCC
RYALAHPQEAIALLRSEYGVNRSQAHMEELQVSKEMIQPLYVEIGYMNPDRVTHIMEQLA
EEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHH
EIGLIKRPVPLTDFLYQAPSEQWVFWRPWFLLSLAACVLILLLAVYLLVCNKRLNREIAL
HCCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
RQQREEEILQLARQDPLTGLPNRLSLMERLEAQISSPNPGCLLFCDLNNFKQVNDGFGHS
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHCCCCCCC
HGDAILCQLAERITRSLNHQRFFARLAGDEFVLLLPDHDLLDAEAIAEVIRMAMAQPFQV
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCC
KEHQLEVGISVGVSQYQPGWRAEQWLIHADRAMYNDKGIELAVAPP
CHHHEEEEHEECHHHCCCCCCHHHHEEEHHHHHCCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]