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The map label for this gene is rnfE [H]

Identifier: 145299429

GI number: 145299429

Start: 2653352

End: 2654032

Strand: Direct

Name: rnfE [H]

Synonym: ASA_2490

Alternate gene names: 145299429

Gene position: 2653352-2654032 (Clockwise)

Preceding gene: 145299428

Following gene: 145299430

Centisome position: 56.43

GC content: 61.09

Gene sequence:

>681_bases
ATGCTGCAAGGGCTGTGGAAGAACAACCCCTCCCTGGTGCAGGTGTTGGGGCTCTGCCCTACCCTGGCAGTTTCCTCCAC
CTTTACCAATGCGCTCGGACTGGGATTGGCCACCATGGCGGTGCTGGTGAGCTCCAACCTGGCCATCTCTCTGGTGCGCA
ACCTGGTGCCCAAGGACATTCGCATTCCCATCTACGTGATGATCATCGCCGCCCTGGTCACCAGCGTGCAGCTGCTGATG
AATGCCTATACCTATGGCCTCTATCAGGCGCTCGGTATCTTCATCGCCCTGATTGTCACCAACTGCGTCATCATAGGCCG
GGCCGAAGCCTATGCCTCCAAGAATCCGCCCCTGCTGGCGGCATTGGACGGTTTCATGATGGGGCTGGGCTTTACCCTGG
TGCTGCTGGTGCTGGGTGGCCTGCGGGAGATCATCGGCATGGGGACCTTGTTTGACGGCGCCGAATTGCTGCTGGGTGAC
TGGGCCAAGTCCCTGCGCATCGAGCTGTTTCATGCCGATGCCAGCCTGCTGCTGGCGATCCTGCCGCCGGGGGGCTTTAT
CGGGCTAGGCCTGATGATCGCCGGCAAGAATGCCATCAATGACTGGCGTGATCGCAAGCAAGCCGCCCCCCTTGCCGATA
GCAGTGTGTCTGTGGCGGGTGTGCACGCCACCCAGCTCTGA

Upstream 100 bases:

>100_bases
CCATCTCAGCCGGAGCCGATAAATGGAACACTCTCATACACTGGATGACCAGACCCCGATCAGTGAGGGCAAGGGCCGTC
GTGAAGAGCTCAAGGAGCTG

Downstream 100 bases:

>100_bases
TCTGAGACGTGAGAAACCATGAACAACCAGAAACGCAGGCAGATCCTGGAGCGACTGCGGGACAACAATCCCCATCCCAC
CACAGAGCTCAACTTCACCT

Product: electron transport complex protein rnfE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MLQGLWKNNPSLVQVLGLCPTLAVSSTFTNALGLGLATMAVLVSSNLAISLVRNLVPKDIRIPIYVMIIAALVTSVQLLM
NAYTYGLYQALGIFIALIVTNCVIIGRAEAYASKNPPLLAALDGFMMGLGFTLVLLVLGGLREIIGMGTLFDGAELLLGD
WAKSLRIELFHADASLLLAILPPGGFIGLGLMIAGKNAINDWRDRKQAAPLADSSVSVAGVHATQL

Sequences:

>Translated_226_residues
MLQGLWKNNPSLVQVLGLCPTLAVSSTFTNALGLGLATMAVLVSSNLAISLVRNLVPKDIRIPIYVMIIAALVTSVQLLM
NAYTYGLYQALGIFIALIVTNCVIIGRAEAYASKNPPLLAALDGFMMGLGFTLVLLVLGGLREIIGMGTLFDGAELLLGD
WAKSLRIELFHADASLLLAILPPGGFIGLGLMIAGKNAINDWRDRKQAAPLADSSVSVAGVHATQL
>Mature_226_residues
MLQGLWKNNPSLVQVLGLCPTLAVSSTFTNALGLGLATMAVLVSSNLAISLVRNLVPKDIRIPIYVMIIAALVTSVQLLM
NAYTYGLYQALGIFIALIVTNCVIIGRAEAYASKNPPLLAALDGFMMGLGFTLVLLVLGGLREIIGMGTLFDGAELLLGD
WAKSLRIELFHADASLLLAILPPGGFIGLGLMIAGKNAINDWRDRKQAAPLADSSVSVAGVHATQL

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4660

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfE

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=206, Percent_Identity=66.0194174757282, Blast_Score=258, Evalue=2e-70,
Organism=Escherichia coli, GI1787914, Length=142, Percent_Identity=34.5070422535211, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR010968 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 23829; Mature: 23829

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQGLWKNNPSLVQVLGLCPTLAVSSTFTNALGLGLATMAVLVSSNLAISLVRNLVPKDI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC
RIPIYVMIIAALVTSVQLLMNAYTYGLYQALGIFIALIVTNCVIIGRAEAYASKNPPLLA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHCCCCCCCHH
ALDGFMMGLGFTLVLLVLGGLREIIGMGTLFDGAELLLGDWAKSLRIELFHADASLLLAI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHEEEEEECCCEEEEEE
LPPGGFIGLGLMIAGKNAINDWRDRKQAAPLADSSVSVAGVHATQL
ECCCCHHHHHHHEECCHHHHHHHHHHHCCCCCCCCCEEEECCCCCC
>Mature Secondary Structure
MLQGLWKNNPSLVQVLGLCPTLAVSSTFTNALGLGLATMAVLVSSNLAISLVRNLVPKDI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC
RIPIYVMIIAALVTSVQLLMNAYTYGLYQALGIFIALIVTNCVIIGRAEAYASKNPPLLA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHCCCCCCCHH
ALDGFMMGLGFTLVLLVLGGLREIIGMGTLFDGAELLLGDWAKSLRIELFHADASLLLAI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHEEEEEECCCEEEEEE
LPPGGFIGLGLMIAGKNAINDWRDRKQAAPLADSSVSVAGVHATQL
ECCCCHHHHHHHEECCHHHHHHHHHHHCCCCCCCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA