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The map label for this gene is ydaM [H]

Identifier: 145299161

GI number: 145299161

Start: 2323272

End: 2324510

Strand: Direct

Name: ydaM [H]

Synonym: ASA_2192

Alternate gene names: 145299161

Gene position: 2323272-2324510 (Clockwise)

Preceding gene: 145299160

Following gene: 145299162

Centisome position: 49.41

GC content: 60.77

Gene sequence:

>1239_bases
ATGCATAATCTGTTTTCCTCCGCACAATTGCTGAGTCTGGTACTGTTTGTCACGCTGTCCCATGTCGGGGTCGCAGCCAT
TTTTGCCTATGTGTGGCATACCCAGCGCCGCATCAGGGGCCTGCTCTACTGGTCTGCCAGCGAACTGGCCATCGCCGCTT
CGTTCTGCGGCCTGCTGCTCCGGCCGCTCGAGGGGGATATCTCCCTTGTCAACATACTGCTGACCAACCTGCTGCTGCTT
GCCGCGCCCCTGCTGTATGAGCGGGGCTTGCGCCACTTCTTTCGACGCGAGGCAGACCAGCTTGGCTGGCTCTGCCCTGC
CATAGCGCTCATCGGATTTATGCTGTTTGCCCTAACCGCCAGCCTGCGGCCCCTGTCTGACGTACACAGCCGGATCATGG
TCCTCTCCGCCGTGCTCTCCCTGCAATTCGCGGTACTGATCTGGCAGCTCTGGCGTTATCAACGTCTGGCCCCCCTCTAT
CGGGTATTGCGCTTTGCCATACTGCTGCTCGGTCTGCAGTTGCTGCTGCAGCTACTCAGGATAGCCAAGCACCTCTGGCA
GCCGGAACTCAACGCCAGTACCTTTACCGACCCCTTGCTCGGCCCCGTGATCCTGCTCAGCCTGCTCTTTACCATAGCCC
GCAGCTATCTGTTGCTCAGCCTTGTCCATACCCGCCAGCAGCAGGCACTATTGGCGACCCAGCGCGAGCTGGAGCAGCGG
GCCAATCAGGATGAGCTGACCGGTCTGCTGAGCCGCCACTATTTTCAGCAACTGTTACAGGCGCAGGTCAGTGCAGGGGC
CAACCCCTGTCAGCTGTTGCTGATCGACCTGGATGACTTCAAGCAGATCAATGACCGGCACGGTCATCCCGCCGGGGATG
CCATGTTGCGACTGGTAGGTCAGGTAATACGCACTACCCTGCCACGGCAGGGGATAGCGGGGCGACTGGGGGGAGACGAG
CTGGTCATTTTCTTGATGGAAAATCCGCAAACGCTGCCACATTACTGCCACACCCTGCAGCAACGGATCGCCCAGGCCAC
CTCGCAGCTCGCTGGCGGTCCCATAAGCATGAGCATAGGCCTGACGTCGCTGCAGCCGGGAGAGCGCTTCGAGCAGGCAT
ACCCCAGAGCGGACAGAGCGCTCTATGCGGCCAAGCAAGGGGGGCGACAACGGACCTGCATACAGGAGCCCCACCACAGC
GAGCCGCAACTGCTACAACCCCTGGTCACTGGCTCGTGA

Upstream 100 bases:

>100_bases
TGATAATGGGTTGGATTCATGCTGTGATCCAGCACTGCCAGCTATCGACCTCATACGTCGGGACGCGGTTAACAGGTGGA
AGAGCCCTGAGAGACCCTTG

Downstream 100 bases:

>100_bases
ACAGGCCGTCGACCATAGAGTGCCGCCCGGCGCAACCTGACGATGTCCCCGCCTATCGCAGCTATGTGACCGAGTGCGGC
GAAGCCGGTCTGCCGCTCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MHNLFSSAQLLSLVLFVTLSHVGVAAIFAYVWHTQRRIRGLLYWSASELAIAASFCGLLLRPLEGDISLVNILLTNLLLL
AAPLLYERGLRHFFRREADQLGWLCPAIALIGFMLFALTASLRPLSDVHSRIMVLSAVLSLQFAVLIWQLWRYQRLAPLY
RVLRFAILLLGLQLLLQLLRIAKHLWQPELNASTFTDPLLGPVILLSLLFTIARSYLLLSLVHTRQQQALLATQRELEQR
ANQDELTGLLSRHYFQQLLQAQVSAGANPCQLLLIDLDDFKQINDRHGHPAGDAMLRLVGQVIRTTLPRQGIAGRLGGDE
LVIFLMENPQTLPHYCHTLQQRIAQATSQLAGGPISMSIGLTSLQPGERFEQAYPRADRALYAAKQGGRQRTCIQEPHHS
EPQLLQPLVTGS

Sequences:

>Translated_412_residues
MHNLFSSAQLLSLVLFVTLSHVGVAAIFAYVWHTQRRIRGLLYWSASELAIAASFCGLLLRPLEGDISLVNILLTNLLLL
AAPLLYERGLRHFFRREADQLGWLCPAIALIGFMLFALTASLRPLSDVHSRIMVLSAVLSLQFAVLIWQLWRYQRLAPLY
RVLRFAILLLGLQLLLQLLRIAKHLWQPELNASTFTDPLLGPVILLSLLFTIARSYLLLSLVHTRQQQALLATQRELEQR
ANQDELTGLLSRHYFQQLLQAQVSAGANPCQLLLIDLDDFKQINDRHGHPAGDAMLRLVGQVIRTTLPRQGIAGRLGGDE
LVIFLMENPQTLPHYCHTLQQRIAQATSQLAGGPISMSIGLTSLQPGERFEQAYPRADRALYAAKQGGRQRTCIQEPHHS
EPQLLQPLVTGS
>Mature_412_residues
MHNLFSSAQLLSLVLFVTLSHVGVAAIFAYVWHTQRRIRGLLYWSASELAIAASFCGLLLRPLEGDISLVNILLTNLLLL
AAPLLYERGLRHFFRREADQLGWLCPAIALIGFMLFALTASLRPLSDVHSRIMVLSAVLSLQFAVLIWQLWRYQRLAPLY
RVLRFAILLLGLQLLLQLLRIAKHLWQPELNASTFTDPLLGPVILLSLLFTIARSYLLLSLVHTRQQQALLATQRELEQR
ANQDELTGLLSRHYFQQLLQAQVSAGANPCQLLLIDLDDFKQINDRHGHPAGDAMLRLVGQVIRTTLPRQGIAGRLGGDE
LVIFLMENPQTLPHYCHTLQQRIAQATSQLAGGPISMSIGLTSLQPGERFEQAYPRADRALYAAKQGGRQRTCIQEPHHS
EPQLLQPLVTGS

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=180, Percent_Identity=35.5555555555556, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI1787262, Length=181, Percent_Identity=28.7292817679558, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI145693134, Length=156, Percent_Identity=33.974358974359, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI87081974, Length=194, Percent_Identity=31.9587628865979, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1786584, Length=187, Percent_Identity=28.8770053475936, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI87082007, Length=202, Percent_Identity=34.6534653465347, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1788381, Length=181, Percent_Identity=32.5966850828729, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787541, Length=182, Percent_Identity=29.6703296703297, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1787802, Length=175, Percent_Identity=28, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787816, Length=157, Percent_Identity=30.5732484076433, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI87081977, Length=189, Percent_Identity=30.1587301587302, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 46204; Mature: 46204

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHNLFSSAQLLSLVLFVTLSHVGVAAIFAYVWHTQRRIRGLLYWSASELAIAASFCGLLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
RPLEGDISLVNILLTNLLLLAAPLLYERGLRHFFRREADQLGWLCPAIALIGFMLFALTA
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLRPLSDVHSRIMVLSAVLSLQFAVLIWQLWRYQRLAPLYRVLRFAILLLGLQLLLQLLR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAKHLWQPELNASTFTDPLLGPVILLSLLFTIARSYLLLSLVHTRQQQALLATQRELEQR
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ANQDELTGLLSRHYFQQLLQAQVSAGANPCQLLLIDLDDFKQINDRHGHPAGDAMLRLVG
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHCCCCCHHHHHHHHHH
QVIRTTLPRQGIAGRLGGDELVIFLMENPQTLPHYCHTLQQRIAQATSQLAGGPISMSIG
HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECC
LTSLQPGERFEQAYPRADRALYAAKQGGRQRTCIQEPHHSEPQLLQPLVTGS
CCCCCCCHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MHNLFSSAQLLSLVLFVTLSHVGVAAIFAYVWHTQRRIRGLLYWSASELAIAASFCGLLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
RPLEGDISLVNILLTNLLLLAAPLLYERGLRHFFRREADQLGWLCPAIALIGFMLFALTA
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLRPLSDVHSRIMVLSAVLSLQFAVLIWQLWRYQRLAPLYRVLRFAILLLGLQLLLQLLR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAKHLWQPELNASTFTDPLLGPVILLSLLFTIARSYLLLSLVHTRQQQALLATQRELEQR
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ANQDELTGLLSRHYFQQLLQAQVSAGANPCQLLLIDLDDFKQINDRHGHPAGDAMLRLVG
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHCCCCCHHHHHHHHHH
QVIRTTLPRQGIAGRLGGDELVIFLMENPQTLPHYCHTLQQRIAQATSQLAGGPISMSIG
HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECC
LTSLQPGERFEQAYPRADRALYAAKQGGRQRTCIQEPHHSEPQLLQPLVTGS
CCCCCCCHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]