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The map label for this gene is yybE [H]

Identifier: 145296932

GI number: 145296932

Start: 3146073

End: 3146999

Strand: Reverse

Name: yybE [H]

Synonym: cgR_2832

Alternate gene names: 145296932

Gene position: 3146999-3146073 (Counterclockwise)

Preceding gene: 145296935

Following gene: 145296930

Centisome position: 94.96

GC content: 56.31

Gene sequence:

>927_bases
ATGGACAACGACGGCGGAGACATGCGAATCGACGACCTACGCAGCTTCATTTCAGTCGCCCAATCAGGCCACCTCACCGA
AACCGCCGAAAGATTAGGCATCCCGCAGCCCACACTTTCCAGACGAATCAGCCGAGTGGAAAAACACGCAGGCACCCCAC
TTTTCGACCGCGCCGGCCGCAAACTCGTCCTCAACCAACGAGGCCACGCCTTCCTCAACCACGCCAGCGCCATCGTCGCA
GAATTCAACTCCGCCGCAACTGAAATCAAACGCCTCATGGACCCAGAAAAAGGCACAATCCGACTGGACTTCATGCATTC
CTTGGGCACTTGGATGGTCCCCGAACTTATCCGAACATTCCGCGCCGAACACCCCAATGTAGAATTCCAACTCCACCAAG
CGGCAGCAATGCTCCTGGTAGATCGTGTTTTGGCTGATGAAACTGACCTCGCATTAGTTGGCCCCAAACCTGCCGAGGTT
GGTACCTCTTTAGGGTGGGCGCCACTGCTTCGTCAACGACTTGCCCTAGCTGTTCCCGCAGATCACCGGCTTGCCTCTTT
TTCTGGCCAAGGAGAATTGCCGTTGATTAGTGCGACGGAAGAACCTTTCGTGGCGATGCGAGCAGGTTTCGGCACCCGAC
TCCTCATGGATGCATTAGCCGAAGAAGCCGGTTTTGTTCCCAATGTGGTTTTCGAATCCATGGAGCTCACCACCGTCGCA
GGGCTTGTCAGCGCAGGTCTCGGCGTTGGTGTGGTTCCGATGGATGATCCGTACCTTCCCACAGTGGGAATCGTGCAACG
CCCACTTAGTCCACCCGCATATAGGGAACTCGGTCTGGTATGGAGGCTTAACGCGGGACCTGCACCGGCCGTGGATAACT
TCCGGAAGTTCGTGGCGGGATCGAGATATGCATTAGAAGAGGGCTGA

Upstream 100 bases:

>100_bases
ATTGCTTGGCTCATGGAGTTCATCATGCGCCAACAGCAAATATTAGTAAAATGTTAGAAATAGCTGTTTTTGATTCACTT
TGCGCATGTAGGCTGTGACC

Downstream 100 bases:

>100_bases
GCTGTAAATGTCGTGGGTGCCGTTTTAAGGGGTTGAGTTTTCCTAATGACTAAGTTTGGTACTGATTGTGTATCAGAGGC
TCTTAGGGGCGATTCTGGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MDNDGGDMRIDDLRSFISVAQSGHLTETAERLGIPQPTLSRRISRVEKHAGTPLFDRAGRKLVLNQRGHAFLNHASAIVA
EFNSAATEIKRLMDPEKGTIRLDFMHSLGTWMVPELIRTFRAEHPNVEFQLHQAAAMLLVDRVLADETDLALVGPKPAEV
GTSLGWAPLLRQRLALAVPADHRLASFSGQGELPLISATEEPFVAMRAGFGTRLLMDALAEEAGFVPNVVFESMELTTVA
GLVSAGLGVGVVPMDDPYLPTVGIVQRPLSPPAYRELGLVWRLNAGPAPAVDNFRKFVAGSRYALEEG

Sequences:

>Translated_308_residues
MDNDGGDMRIDDLRSFISVAQSGHLTETAERLGIPQPTLSRRISRVEKHAGTPLFDRAGRKLVLNQRGHAFLNHASAIVA
EFNSAATEIKRLMDPEKGTIRLDFMHSLGTWMVPELIRTFRAEHPNVEFQLHQAAAMLLVDRVLADETDLALVGPKPAEV
GTSLGWAPLLRQRLALAVPADHRLASFSGQGELPLISATEEPFVAMRAGFGTRLLMDALAEEAGFVPNVVFESMELTTVA
GLVSAGLGVGVVPMDDPYLPTVGIVQRPLSPPAYRELGLVWRLNAGPAPAVDNFRKFVAGSRYALEEG
>Mature_308_residues
MDNDGGDMRIDDLRSFISVAQSGHLTETAERLGIPQPTLSRRISRVEKHAGTPLFDRAGRKLVLNQRGHAFLNHASAIVA
EFNSAATEIKRLMDPEKGTIRLDFMHSLGTWMVPELIRTFRAEHPNVEFQLHQAAAMLLVDRVLADETDLALVGPKPAEV
GTSLGWAPLLRQRLALAVPADHRLASFSGQGELPLISATEEPFVAMRAGFGTRLLMDALAEEAGFVPNVVFESMELTTVA
GLVSAGLGVGVVPMDDPYLPTVGIVQRPLSPPAYRELGLVWRLNAGPAPAVDNFRKFVAGSRYALEEG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=287, Percent_Identity=26.1324041811847, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI157672245, Length=229, Percent_Identity=31.4410480349345, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1787879, Length=293, Percent_Identity=29.3515358361775, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI2367136, Length=272, Percent_Identity=28.3088235294118, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787530, Length=260, Percent_Identity=25, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788748, Length=303, Percent_Identity=24.4224422442244, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1790399, Length=281, Percent_Identity=25.2669039145907, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1788887, Length=265, Percent_Identity=25.6603773584906, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788296, Length=237, Percent_Identity=27.4261603375527, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87081904, Length=228, Percent_Identity=25.4385964912281, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786713, Length=292, Percent_Identity=26.3698630136986, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790208, Length=307, Percent_Identity=25.4071661237785, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787601, Length=176, Percent_Identity=23.2954545454545, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787806, Length=250, Percent_Identity=24, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788481, Length=296, Percent_Identity=26.3513513513513, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI87082132, Length=254, Percent_Identity=23.6220472440945, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786401, Length=133, Percent_Identity=27.8195488721804, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788297, Length=248, Percent_Identity=22.5806451612903, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787589, Length=123, Percent_Identity=31.7073170731707, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33446; Mature: 33446

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNDGGDMRIDDLRSFISVAQSGHLTETAERLGIPQPTLSRRISRVEKHAGTPLFDRAGR
CCCCCCCEEHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHCCC
KLVLNQRGHAFLNHASAIVAEFNSAATEIKRLMDPEKGTIRLDFMHSLGTWMVPELIRTF
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCHHHHHHHHHHH
RAEHPNVEFQLHQAAAMLLVDRVLADETDLALVGPKPAEVGTSLGWAPLLRQRLALAVPA
HCCCCCCEEEHHHHHHHHHHHHHHCCCCCEEEECCCHHHHCCCCCHHHHHHHHHHHCCCC
DHRLASFSGQGELPLISATEEPFVAMRAGFGTRLLMDALAEEAGFVPNVVFESMELTTVA
CCCHHCCCCCCCCCEEECCCCCHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
GLVSAGLGVGVVPMDDPYLPTVGIVQRPLSPPAYRELGLVWRLNAGPAPAVDNFRKFVAG
HHHHHCCCCCEECCCCCCCCCHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHCC
SRYALEEG
CCCCCCCC
>Mature Secondary Structure
MDNDGGDMRIDDLRSFISVAQSGHLTETAERLGIPQPTLSRRISRVEKHAGTPLFDRAGR
CCCCCCCEEHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHCCC
KLVLNQRGHAFLNHASAIVAEFNSAATEIKRLMDPEKGTIRLDFMHSLGTWMVPELIRTF
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCHHHHHHHHHHH
RAEHPNVEFQLHQAAAMLLVDRVLADETDLALVGPKPAEVGTSLGWAPLLRQRLALAVPA
HCCCCCCEEEHHHHHHHHHHHHHHCCCCCEEEECCCHHHHCCCCCHHHHHHHHHHHCCCC
DHRLASFSGQGELPLISATEEPFVAMRAGFGTRLLMDALAEEAGFVPNVVFESMELTTVA
CCCHHCCCCCCCCCEEECCCCCHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
GLVSAGLGVGVVPMDDPYLPTVGIVQRPLSPPAYRELGLVWRLNAGPAPAVDNFRKFVAG
HHHHHCCCCCEECCCCCCCCCHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHCC
SRYALEEG
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]