Click here to switch to the map view.

The map label for this gene is lytR [H]

Identifier: 145296895

GI number: 145296895

Start: 3103430

End: 3104476

Strand: Direct

Name: lytR [H]

Synonym: cgR_2795

Alternate gene names: 145296895

Gene position: 3103430-3104476 (Clockwise)

Preceding gene: 145296893

Following gene: 145296896

Centisome position: 93.64

GC content: 59.31

Gene sequence:

>1047_bases
ATGCCTCCTAGGCAAACCCCACCGAGGCAGGTTCCCCCACAACAGCAGTACCAGCAGCCTGGTCAGATCGGGCAGGTTCG
TCCACAGCCGCCGATTATTGCGGATAGCCAGGTGGGTGGAGGGAGACGTCGAAAAGCAATATCTTTTAAGCCCCGTGGCT
GCCTTGGCTCGCTCGCGGGCCTGGTTGCTGTGGTGCTGGTGCTCGCTTTTGTGGTCGCGCTGTGGGCGGATGCCAAGCTG
AATCGCGTGGATGCGACGCCCGCGACGCAGGTGGCGAACACCGCCGGCACGAACTGGCTGCTGGTGGGTTCGGACTCGCG
GCAGGGTTTAAGTGATGAGGATATTGAGCGACTGGGTACCGGCGGCGATATTGGCGTGGGGCGTACGGACACGATCATGG
TGTTGCATATGCCGCGTACTGGCGAGCCGACGCTGTTGTCGATTCCGCGTGATTCTTATGTCAATGTCCCTGGCTGGGGC
ATGGATAAGGCAAACGCCGCATTTACCGTGGGTGGTCCTGAGCTGTTGACGCAGACTGTTGAGGAAGCAACGGGTTTGCG
GATTGATCACTATGCGGAAATCGGCATGGGTGGGTTGGCCAACATGGTCGATGCGGTAGGTGGTGTGGAAATGTGTCCCG
CCGAGGCAATGTACGATCCGCTGGCGAACCTGGATATTCAGGCTGGTTGCCAGGAATTTGATGGGGCAGCCGCGCTGGGT
TATGTGCGCACCCGTGCCACAGCCCTGGGTGATCTGGACCGGGTGGTGCGTCAGCGGGAATTCTTCTCCGCCCTGCTGAG
TACAGCTACGTCCCCGGGCACGTTGCTGAATCCCTTCCGCACCTTCCCGATGATCTCCAATGCAGTGGGAACATTCACGG
TGGGCGAAGGCGATCACGTATGGCACTTGGTCAGGTTGGCGCTGGCGATGCGCAGCGGAATCCAGACAGAAACCGTACCG
ATCGCATCATTTGCCGACTACGATGTGGGAAATGTTGCGATTTGGGACGAAGCTGGAGCCGAAGCACTATTTAGCTCCAT
GCGTTAA

Upstream 100 bases:

>100_bases
TCGAACTCCACGGACCCCTCCGGTGAATGAAACAAGGGTCTATCAGCCAAGGCAAACGCCACCGCGCCAGACTCCTCCAA
GGCAGACACCTCCACGACAA

Downstream 100 bases:

>100_bases
AACCCCAGGTAATCATTCACAGGAAGTGTCCAGTCAACTTTTTGGTTAATCGATTATCTTACCTAGAGACTTGGATACTT
CCCTCCACGGATTGCTAACG

Product: hypothetical protein

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 348; Mature: 347

Protein sequence:

>348_residues
MPPRQTPPRQVPPQQQYQQPGQIGQVRPQPPIIADSQVGGGRRRKAISFKPRGCLGSLAGLVAVVLVLAFVVALWADAKL
NRVDATPATQVANTAGTNWLLVGSDSRQGLSDEDIERLGTGGDIGVGRTDTIMVLHMPRTGEPTLLSIPRDSYVNVPGWG
MDKANAAFTVGGPELLTQTVEEATGLRIDHYAEIGMGGLANMVDAVGGVEMCPAEAMYDPLANLDIQAGCQEFDGAAALG
YVRTRATALGDLDRVVRQREFFSALLSTATSPGTLLNPFRTFPMISNAVGTFTVGEGDHVWHLVRLALAMRSGIQTETVP
IASFADYDVGNVAIWDEAGAEALFSSMR

Sequences:

>Translated_348_residues
MPPRQTPPRQVPPQQQYQQPGQIGQVRPQPPIIADSQVGGGRRRKAISFKPRGCLGSLAGLVAVVLVLAFVVALWADAKL
NRVDATPATQVANTAGTNWLLVGSDSRQGLSDEDIERLGTGGDIGVGRTDTIMVLHMPRTGEPTLLSIPRDSYVNVPGWG
MDKANAAFTVGGPELLTQTVEEATGLRIDHYAEIGMGGLANMVDAVGGVEMCPAEAMYDPLANLDIQAGCQEFDGAAALG
YVRTRATALGDLDRVVRQREFFSALLSTATSPGTLLNPFRTFPMISNAVGTFTVGEGDHVWHLVRLALAMRSGIQTETVP
IASFADYDVGNVAIWDEAGAEALFSSMR
>Mature_347_residues
PPRQTPPRQVPPQQQYQQPGQIGQVRPQPPIIADSQVGGGRRRKAISFKPRGCLGSLAGLVAVVLVLAFVVALWADAKLN
RVDATPATQVANTAGTNWLLVGSDSRQGLSDEDIERLGTGGDIGVGRTDTIMVLHMPRTGEPTLLSIPRDSYVNVPGWGM
DKANAAFTVGGPELLTQTVEEATGLRIDHYAEIGMGGLANMVDAVGGVEMCPAEAMYDPLANLDIQAGCQEFDGAAALGY
VRTRATALGDLDRVVRQREFFSALLSTATSPGTLLNPFRTFPMISNAVGTFTVGEGDHVWHLVRLALAMRSGIQTETVPI
ASFADYDVGNVAIWDEAGAEALFSSMR

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 37027; Mature: 36895

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPRQTPPRQVPPQQQYQQPGQIGQVRPQPPIIADSQVGGGRRRKAISFKPRGCLGSLAG
CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCEECCCCCHHHHHHHH
LVAVVLVLAFVVALWADAKLNRVDATPATQVANTAGTNWLLVGSDSRQGLSDEDIERLGT
HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHCC
GGDIGVGRTDTIMVLHMPRTGEPTLLSIPRDSYVNVPGWGMDKANAAFTVGGPELLTQTV
CCCCCCCCCCEEEEEECCCCCCCCEEECCCCCEECCCCCCCCCCCCEEEECCHHHHHHHH
EEATGLRIDHYAEIGMGGLANMVDAVGGVEMCPAEAMYDPLANLDIQAGCQEFDGAAALG
HHHHCCEEEHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHCHHHHCCCHHHH
YVRTRATALGDLDRVVRQREFFSALLSTATSPGTLLNPFRTFPMISNAVGTFTVGEGDHV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCHHHHHHHHHHCCCEEEECCCHHH
WHLVRLALAMRSGIQTETVPIASFADYDVGNVAIWDEAGAEALFSSMR
HHHHHHHHHHHCCCCCCCEEECHHCCCCCCCEEEECCCCHHHHHHCCC
>Mature Secondary Structure 
PPRQTPPRQVPPQQQYQQPGQIGQVRPQPPIIADSQVGGGRRRKAISFKPRGCLGSLAG
CCCCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCEECCCCCHHHHHHHH
LVAVVLVLAFVVALWADAKLNRVDATPATQVANTAGTNWLLVGSDSRQGLSDEDIERLGT
HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHCC
GGDIGVGRTDTIMVLHMPRTGEPTLLSIPRDSYVNVPGWGMDKANAAFTVGGPELLTQTV
CCCCCCCCCCEEEEEECCCCCCCCEEECCCCCEECCCCCCCCCCCCEEEECCHHHHHHHH
EEATGLRIDHYAEIGMGGLANMVDAVGGVEMCPAEAMYDPLANLDIQAGCQEFDGAAALG
HHHHCCEEEHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHCHHHHCCCHHHH
YVRTRATALGDLDRVVRQREFFSALLSTATSPGTLLNPFRTFPMISNAVGTFTVGEGDHV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCHHHHHHHHHHCCCEEEECCCHHH
WHLVRLALAMRSGIQTETVPIASFADYDVGNVAIWDEAGAEALFSSMR
HHHHHHHHHHHCCCCCCCEEECHHCCCCCCCEEEECCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376 [H]