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The map label for this gene is ybdK [C]

Identifier: 145296735

GI number: 145296735

Start: 2921336

End: 2922466

Strand: Reverse

Name: ybdK [C]

Synonym: cgR_2639

Alternate gene names: 145296735

Gene position: 2922466-2921336 (Counterclockwise)

Preceding gene: 145296736

Following gene: 145296734

Centisome position: 88.18

GC content: 54.2

Gene sequence:

>1131_bases
ATGGGCATTGAGTTTAAGCGTTCACCGCGACCCACCCTGGGCGTTGAGTGGGAAATTGCACTTGTTGATCCAGAAACACG
TGATCTAGCCCCGCGCGCTGCAGAAATACTAGAGATTGTGGCCAAGAACCACCCTGAGGTGCACCTCGAGCGCGAATTCC
TCCAAAACACCGTGGAGCTTGTCACCGGAGTGTGCGACACCGTCCCCGAAGCGGTGGCAGAGCTTTCCCACGATCTAGAT
GCGCTGAAAGAAGCAGCGGATTCTCTCGGGCTTCGGTTGTGGACCTCTGGATCCCACCCATTTTCGGATTTCCGCGAAAA
CCCAGTATCTGAAAAAGGCTCCTACGACGAGATCATCGCGCGCACCCAATACTGGGGAAACCAGATGTTGATTTGGGGCA
TTCACGTCCACGTGGGCATCAGCCATGAAGATCGCGTGTGGCCGATCATCAATGCGCTGCTGACAAATTACCCACATCTG
TTGGCACTTTCTGCAAGCTCTCCAGCATGGGACGGACTTGATACCGGTTATGCCTCCAACCGGACGATGCTCTACCAACA
GCTGCCTACAGCCGGACTGCCATACCAATTCCAAAGCTGGGATGAATGGTGCAGCTACATGGCGGATCAAGATAAATCCG
GTGTCATCAACCACACCGGATCCATGCACTTTGATATCCGCCCCGCATCCAAATGGGGAACCATCGAAGTCCGCGTGGCC
GATTCTACCTCCAACCTGCGGGAACTGTCTGCCATCGTGGCGTTGACCCACTGTCTCGTGGTGCACTACGACCGCATGAT
CGACGCTGGCGAAGAGCTTCCCTCCCTGCAACAATGGCACGTTTCGGAAAATAAATGGCGCGCGGCTAGGTATGGTCTGG
ATGCCGAAATCATCATTTCCAGAGACACCGATGAAGCGATGGTTCAAGACGAACTCCGCCGACTAGTTGCGCAATTGATG
CCTCTAGCCAACGAACTCGGCTGCGCTCGTGAGCTTGAACTTGTGTTGGAAATCCTGGAACGTGGTGGTGGATACGAACG
CCAACGCAGAGTGTTTAAGGAAACTGGCAGTTGGAAAGCTGCAGTTGATTTAGCCTGCGACGAACTCAACGACCTCAAAG
CATTGGACTAA

Upstream 100 bases:

>100_bases
TTTTGGTGCTGGTCCAAGACGTAGCGCTGTAGTTTTCTCGGATTTGTTGGAACTAGTCGTAATTAGTCGGACTTAGTCGG
ATTTTAAGGAGGCTCACGCC

Downstream 100 bases:

>100_bases
ACAGCTATGGTGGAATCCCAACACATCATTTTCATCCCAGAATCCCAACAAACACCCGACGAGTTTACCGAGGTAGTCAA
CGAGATTCCCGCCGGAATCA

Product: carboxylate-amine ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 375

Protein sequence:

>376_residues
MGIEFKRSPRPTLGVEWEIALVDPETRDLAPRAAEILEIVAKNHPEVHLEREFLQNTVELVTGVCDTVPEAVAELSHDLD
ALKEAADSLGLRLWTSGSHPFSDFRENPVSEKGSYDEIIARTQYWGNQMLIWGIHVHVGISHEDRVWPIINALLTNYPHL
LALSASSPAWDGLDTGYASNRTMLYQQLPTAGLPYQFQSWDEWCSYMADQDKSGVINHTGSMHFDIRPASKWGTIEVRVA
DSTSNLRELSAIVALTHCLVVHYDRMIDAGEELPSLQQWHVSENKWRAARYGLDAEIIISRDTDEAMVQDELRRLVAQLM
PLANELGCARELELVLEILERGGGYERQRRVFKETGSWKAAVDLACDELNDLKALD

Sequences:

>Translated_376_residues
MGIEFKRSPRPTLGVEWEIALVDPETRDLAPRAAEILEIVAKNHPEVHLEREFLQNTVELVTGVCDTVPEAVAELSHDLD
ALKEAADSLGLRLWTSGSHPFSDFRENPVSEKGSYDEIIARTQYWGNQMLIWGIHVHVGISHEDRVWPIINALLTNYPHL
LALSASSPAWDGLDTGYASNRTMLYQQLPTAGLPYQFQSWDEWCSYMADQDKSGVINHTGSMHFDIRPASKWGTIEVRVA
DSTSNLRELSAIVALTHCLVVHYDRMIDAGEELPSLQQWHVSENKWRAARYGLDAEIIISRDTDEAMVQDELRRLVAQLM
PLANELGCARELELVLEILERGGGYERQRRVFKETGSWKAAVDLACDELNDLKALD
>Mature_375_residues
GIEFKRSPRPTLGVEWEIALVDPETRDLAPRAAEILEIVAKNHPEVHLEREFLQNTVELVTGVCDTVPEAVAELSHDLDA
LKEAADSLGLRLWTSGSHPFSDFRENPVSEKGSYDEIIARTQYWGNQMLIWGIHVHVGISHEDRVWPIINALLTNYPHLL
ALSASSPAWDGLDTGYASNRTMLYQQLPTAGLPYQFQSWDEWCSYMADQDKSGVINHTGSMHFDIRPASKWGTIEVRVAD
STSNLRELSAIVALTHCLVVHYDRMIDAGEELPSLQQWHVSENKWRAARYGLDAEIIISRDTDEAMVQDELRRLVAQLMP
LANELGCARELELVLEILERGGGYERQRRVFKETGSWKAAVDLACDELNDLKALD

Specific function: ATP-dependent carboxylate-amine ligase

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family

Homologues:

Organism=Escherichia coli, GI1786795, Length=369, Percent_Identity=26.2872628726287, Blast_Score=139, Evalue=4e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CAAL_CORGB (A4QHD8)

Other databases:

- EMBL:   AP009044
- RefSeq:   YP_001139556.1
- ProteinModelPortal:   A4QHD8
- SMR:   A4QHD8
- STRING:   A4QHD8
- GeneID:   4991845
- GenomeReviews:   AP009044_GR
- KEGG:   cgt:cgR_2639
- eggNOG:   COG2170
- HOGENOM:   HBG564677
- OMA:   NWQEFAG
- ProtClustDB:   PRK13517
- HAMAP:   MF_01609
- InterPro:   IPR011793
- InterPro:   IPR006336
- TIGRFAMs:   TIGR02050

Pfam domain/function: PF04107 GCS2

EC number: NA

Molecular weight: Translated: 42439; Mature: 42308

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIEFKRSPRPTLGVEWEIALVDPETRDLAPRAAEILEIVAKNHPEVHLEREFLQNTVEL
CCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHH
VTGVCDTVPEAVAELSHDLDALKEAADSLGLRLWTSGSHPFSDFRENPVSEKGSYDEIIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHCCCCCCCCCHHHHHH
RTQYWGNQMLIWGIHVHVGISHEDRVWPIINALLTNYPHLLALSASSPAWDGLDTGYASN
HHHHCCCEEEEEEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCC
RTMLYQQLPTAGLPYQFQSWDEWCSYMADQDKSGVINHTGSMHFDIRPASKWGTIEVRVA
CEEEHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCEECCCCEEEEEEECCCCCEEEEEEE
DSTSNLRELSAIVALTHCLVVHYDRMIDAGEELPSLQQWHVSENKWRAARYGLDAEIIIS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCHHHHCCCCCCHHHHHHCCCEEEEEE
RDTDEAMVQDELRRLVAQLMPLANELGCARELELVLEILERGGGYERQRRVFKETGSWKA
CCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHH
AVDLACDELNDLKALD
HHHHHHHHHCCCCCCC
>Mature Secondary Structure 
GIEFKRSPRPTLGVEWEIALVDPETRDLAPRAAEILEIVAKNHPEVHLEREFLQNTVEL
CCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHH
VTGVCDTVPEAVAELSHDLDALKEAADSLGLRLWTSGSHPFSDFRENPVSEKGSYDEIIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHCCCCCCCCCHHHHHH
RTQYWGNQMLIWGIHVHVGISHEDRVWPIINALLTNYPHLLALSASSPAWDGLDTGYASN
HHHHCCCEEEEEEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCC
RTMLYQQLPTAGLPYQFQSWDEWCSYMADQDKSGVINHTGSMHFDIRPASKWGTIEVRVA
CEEEHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCEECCCCEEEEEEECCCCCEEEEEEE
DSTSNLRELSAIVALTHCLVVHYDRMIDAGEELPSLQQWHVSENKWRAARYGLDAEIIIS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCHHHHCCCCCCHHHHHHCCCEEEEEE
RDTDEAMVQDELRRLVAQLMPLANELGCARELELVLEILERGGGYERQRRVFKETGSWKA
CCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHH
AVDLACDELNDLKALD
HHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA