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The map label for this gene is yjmB [H]

Identifier: 145296550

GI number: 145296550

Start: 2708850

End: 2710301

Strand: Reverse

Name: yjmB [H]

Synonym: cgR_2459

Alternate gene names: 145296550

Gene position: 2710301-2708850 (Counterclockwise)

Preceding gene: 145296552

Following gene: 145296549

Centisome position: 81.78

GC content: 50.83

Gene sequence:

>1452_bases
ATGACCAGCACAATCGGTGCAACCGCACCCAAGACAATCGAACGAGACGTTCGGCCTTTTGGCTTCCGAGACAAGCTCGG
ATACATGTTTGGTGACTTCGGCAATGACTTCAGCTTCATTCTGCAGTCCACGTTCTTCATGTTGTTTTACACCAACGTTG
TCGGCATTCACCCAGCTCATGTTGGTACGCTGCTGCTCGTCGCTCGAATCTTCGATGCCTTCACGGACGTGATCATCGGA
ATTATCGTCGACCGTCTGCCAAGTTCACGAGCTGGATACAAGTTCAAGCGCTGGGTGAAGTGGATCGCCATTCCGGTAGC
CATTGCATCCGCACTGATGTACATGTCGTTTGTGGCAGACTTTGATTCCTACGGAGCCAAGGTTGCCTGGATGACTGCCA
CCTACTTCCTTTGGGGATCATTCTTCTACGGTTTGGTGAACATCCCTTACGGCTCCATGGCCTCGGTGATTTCTTCCAAC
CCAGACGATCGTGCACACCTGTCTGCATGGCGATCTACAGGCGGAAACCTGGCCAACATCGTGATTTCCAGTGTTCTTCC
ACTGATTGTATATGTCAGTAATGAAGCTGGAGTTTCGGTTCTCTCTGGCCAACGCATGATGTGGTCGGCGATTGTCTGTT
CCGTCCTTGCGGTAATTTGCTACGCAGCGCTTTACCTTCTGGTGGAAGAGCGAGTAGTTGAAAATCAGGACATTCCGAAG
GAAAAAGTCGGCCTGGGCAAGATGCTCGGCACGGTTTTAAGTAACAGGGCCCTGCTTGGCCTCATTGTCGCCGCGCTCCT
GTTGCTTCTTGCATTCATGTATGTGGGCGGAATGATCGGCTATCTCTTCCTGGAGTACTTCCGCGATGGGCGCCTGCAAT
CACCTGCATCTTTCGCAGCTTTGGTTCCTTCACTAGTTTTGATTGTGTTGGCTCCATGGCTGGCTAAGAAGTTTGGCAAG
GCAGAGGTCGGCATTACCGCTACCTTTATTGGCGGCGTTATCTTCCTGACTGCCTATTTCCTCAAGATTGAAAACGCTGC
AGTCTGGATCGCCTTCTATGCAGTTGCAATGTTCTGCGTGAATGTTTTCAACTTCCTAGTCTGGGCATTCATCACAGATG
TGATTGACCATCAGGAAGTTCAAACTGGCCACCGTGATGACGGTACCGTTTACGCTGTGTACTCATGGGCGCGAAAGCTT
GGACAGGCTATCGCAGGATTCCTGATCGGCGCTTCACTTTCTTGGGTTGGCTTCAACTCTGAAACTGCAGCTCAAGGACA
GGCCCAAACTGAAGAAGCGATCAATGGAGTTTACTTCCTTGCCAATGTTATTCCCGGTGTTGGCTTGATCCTGGTTTCCC
TGGCTATTCTCTTCCTGTACCCGTTGAAGCGCAAGGTTGTGGCGAAAAACGTTGCAATTCTTGCTTCTCGACGTGACGGT
GTCGAAGTATAA

Upstream 100 bases:

>100_bases
GGATTACAAGAAGAGTATATTGATAGTATGTATCACCAATACGATGGTTCAATTCACTTCAACGTAACCTATTCAGATTC
TGTTCAAATTGGAGATACAG

Downstream 100 bases:

>100_bases
ACCTTCAACGCATTAACGTCATCTGACAAAACTCCCCAGCTGCTATTGAACCTAAGCGGTAGGGGAGTTTTTCTATTTCC
TAATTGCAGCTCTACCTTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 483; Mature: 482

Protein sequence:

>483_residues
MTSTIGATAPKTIERDVRPFGFRDKLGYMFGDFGNDFSFILQSTFFMLFYTNVVGIHPAHVGTLLLVARIFDAFTDVIIG
IIVDRLPSSRAGYKFKRWVKWIAIPVAIASALMYMSFVADFDSYGAKVAWMTATYFLWGSFFYGLVNIPYGSMASVISSN
PDDRAHLSAWRSTGGNLANIVISSVLPLIVYVSNEAGVSVLSGQRMMWSAIVCSVLAVICYAALYLLVEERVVENQDIPK
EKVGLGKMLGTVLSNRALLGLIVAALLLLLAFMYVGGMIGYLFLEYFRDGRLQSPASFAALVPSLVLIVLAPWLAKKFGK
AEVGITATFIGGVIFLTAYFLKIENAAVWIAFYAVAMFCVNVFNFLVWAFITDVIDHQEVQTGHRDDGTVYAVYSWARKL
GQAIAGFLIGASLSWVGFNSETAAQGQAQTEEAINGVYFLANVIPGVGLILVSLAILFLYPLKRKVVAKNVAILASRRDG
VEV

Sequences:

>Translated_483_residues
MTSTIGATAPKTIERDVRPFGFRDKLGYMFGDFGNDFSFILQSTFFMLFYTNVVGIHPAHVGTLLLVARIFDAFTDVIIG
IIVDRLPSSRAGYKFKRWVKWIAIPVAIASALMYMSFVADFDSYGAKVAWMTATYFLWGSFFYGLVNIPYGSMASVISSN
PDDRAHLSAWRSTGGNLANIVISSVLPLIVYVSNEAGVSVLSGQRMMWSAIVCSVLAVICYAALYLLVEERVVENQDIPK
EKVGLGKMLGTVLSNRALLGLIVAALLLLLAFMYVGGMIGYLFLEYFRDGRLQSPASFAALVPSLVLIVLAPWLAKKFGK
AEVGITATFIGGVIFLTAYFLKIENAAVWIAFYAVAMFCVNVFNFLVWAFITDVIDHQEVQTGHRDDGTVYAVYSWARKL
GQAIAGFLIGASLSWVGFNSETAAQGQAQTEEAINGVYFLANVIPGVGLILVSLAILFLYPLKRKVVAKNVAILASRRDG
VEV
>Mature_482_residues
TSTIGATAPKTIERDVRPFGFRDKLGYMFGDFGNDFSFILQSTFFMLFYTNVVGIHPAHVGTLLLVARIFDAFTDVIIGI
IVDRLPSSRAGYKFKRWVKWIAIPVAIASALMYMSFVADFDSYGAKVAWMTATYFLWGSFFYGLVNIPYGSMASVISSNP
DDRAHLSAWRSTGGNLANIVISSVLPLIVYVSNEAGVSVLSGQRMMWSAIVCSVLAVICYAALYLLVEERVVENQDIPKE
KVGLGKMLGTVLSNRALLGLIVAALLLLLAFMYVGGMIGYLFLEYFRDGRLQSPASFAALVPSLVLIVLAPWLAKKFGKA
EVGITATFIGGVIFLTAYFLKIENAAVWIAFYAVAMFCVNVFNFLVWAFITDVIDHQEVQTGHRDDGTVYAVYSWARKLG
QAIAGFLIGASLSWVGFNSETAAQGQAQTEEAINGVYFLANVIPGVGLILVSLAILFLYPLKRKVVAKNVAILASRRDGV
EV

Specific function: Unknown

COG id: COG2211

COG function: function code G; Na+/melibiose symporter and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:galactoside symporter (TC 2.A.2) family [H]

Homologues:

Organism=Homo sapiens, GI42713696, Length=492, Percent_Identity=24.390243902439, Blast_Score=76, Evalue=9e-14,
Organism=Homo sapiens, GI211063479, Length=458, Percent_Identity=24.8908296943231, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI122937339, Length=485, Percent_Identity=23.2989690721649, Blast_Score=69, Evalue=9e-12,
Organism=Escherichia coli, GI145693206, Length=473, Percent_Identity=28.7526427061311, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI48994989, Length=458, Percent_Identity=27.7292576419214, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI1787902, Length=467, Percent_Identity=29.5503211991435, Blast_Score=151, Evalue=7e-38,
Organism=Escherichia coli, GI1786466, Length=439, Percent_Identity=28.4738041002278, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI87082306, Length=447, Percent_Identity=26.8456375838926, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1790561, Length=448, Percent_Identity=27.6785714285714, Blast_Score=109, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196
- InterPro:   IPR001927
- InterPro:   IPR018043 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 52853; Mature: 52721

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCC
>Mature Secondary Structure 
TSTIGATAPKTIERDVRPFGFRDKLGYMFGDFGNDFSFILQSTFFMLFYTNVVGIHPAH
CCCCCCCCCHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHH
VGTLLLVARIFDAFTDVIIGIIVDRLPSSRAGYKFKRWVKWIAIPVAIASALMYMSFVAD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FDSYGAKVAWMTATYFLWGSFFYGLVNIPYGSMASVISSNPDDRAHLSAWRSTGGNLANI
HHHHCCEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHCCCHHHHH
VISSVLPLIVYVSNEAGVSVLSGQRMMWSAIVCSVLAVICYAALYLLVEERVVENQDIPK
HHHHHHHHHEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
EKVGLGKMLGTVLSNRALLGLIVAALLLLLAFMYVGGMIGYLFLEYFRDGRLQSPASFAA
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
LVPSLVLIVLAPWLAKKFGKAEVGITATFIGGVIFLTAYFLKIENAAVWIAFYAVAMFCV
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
NVFNFLVWAFITDVIDHQEVQTGHRDDGTVYAVYSWARKLGQAIAGFLIGASLSWVGFNS
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCEEECCCC
ETAAQGQAQTEEAINGVYFLANVIPGVGLILVSLAILFLYPLKRKVVAKNVAILASRRDG
CCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCC
VEV
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9579062; 9384377 [H]