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The map label for this gene is rbsR [H]

Identifier: 145296482

GI number: 145296482

Start: 2629559

End: 2630686

Strand: Direct

Name: rbsR [H]

Synonym: cgR_2393

Alternate gene names: 145296482

Gene position: 2629559-2630686 (Clockwise)

Preceding gene: 145296481

Following gene: 145296483

Centisome position: 79.34

GC content: 56.74

Gene sequence:

>1128_bases
ATGACAGATTCTGGGGCTCACAGCGACTCAAAAGCCACCATTTATGATGTCGCAAAAGTCGCTGGTGTCTCCCCTTCCAC
GGTGTCGCGGGCGTTTTCGCAGCCTGGGCGAGTGAGTTTTTCCACTGCGGAGAAAATCCGCAACGCTGCACGTCAGGTGG
GTTATGGCAGGCGTGTGGAAACTCCGGCTTTTCAGCGCCAAAACACCGGCATCATCGCTATGGTTGCCGCCGATGCATCG
AATCCCTTCTTCTTGGAAATTTTCCAGGGCGCGCAGCATGCCGCAAGCACTCAGGGCTATACGGTTGCGCTTGTCGACGC
CCGGGAGTCGGCGATTAAGTCCAGGGAGGTGCTAGACAAGATCGTCCCCCACGCCGATGGCTTATTGCTCGCTGCATCTC
GGATGGATTCTGGTGAGATCCACAAAGTCGCGCGGGAAATACCCACTGTATTAATCAGCCGTGAAGTGCAAGGAATCCCC
AGTGTGATGGTGGATAACTACGACGGTGCGGCTAAAGCTGTGGTGCATTTGGTGGATCAGGGGTGCCATTCCATCACGTA
TATCGCCGGACCTAATAAATCCTGGGCTGATGCCACGCGCTGGCGCGGACTCGTTGATGCCGCAAGCTCGCTGGCGGCTG
CCGTTGAGGGTGGGGTGGCGTCGACAAGCGCTATTTCAATTTCTCGAAGCGTGACGGTGCAGCCGGGCCGAATGAGGCAT
TTGATCAAGCCGAAGATGAATACCATTTCGGTGGATTCGCCGGATTTTGTGGGCGGGCGGCGTGCGTTTGAGGAGTGGGC
GAAGGATCGTACAGATGCGGTGATCTGTTTCAACGACATGGTGGCGCTTGGTTTCATACAACAGGCGAGGCTTTCTGGGG
TGCGTGTGCCGCATGATGTTGCAGTGGTTGGTTTTGATAATACGGAGATTTCGGTGCTCAGCACGCCGTCGCTGACAACA
GTCGCGGGGCCGCTTCGGGCGGTGGGTCGAGTAGCGACAGCGAACCTGATTGCCCTGCTGAAAGGCATGAAAGCACCTCT
GATGGCGAAGCCCCGCGAACTTCCTACGCGTCTCATTGTTCGGGAATCTTCGCTGAAAACAGCGGTGGATTTGAAACGCG
GCTCGTAG

Upstream 100 bases:

>100_bases
TCGCGGACATCATCTAAAATTTCGTGCAGGTACTCGGGTATCGGCATCGTCAACATAGAATCAAGACTAGTGATTTCTTT
TGCGCTATATACTCTTGTGC

Downstream 100 bases:

>100_bases
TAAAACTGCCCTGGTTGCAACAATTGGCAACAAGTAGATATCGCTCAGTGTGACGGGTGATCATAAAGTTATGACTACTT
CACATGCATCACACCCCGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 374

Protein sequence:

>375_residues
MTDSGAHSDSKATIYDVAKVAGVSPSTVSRAFSQPGRVSFSTAEKIRNAARQVGYGRRVETPAFQRQNTGIIAMVAADAS
NPFFLEIFQGAQHAASTQGYTVALVDARESAIKSREVLDKIVPHADGLLLAASRMDSGEIHKVAREIPTVLISREVQGIP
SVMVDNYDGAAKAVVHLVDQGCHSITYIAGPNKSWADATRWRGLVDAASSLAAAVEGGVASTSAISISRSVTVQPGRMRH
LIKPKMNTISVDSPDFVGGRRAFEEWAKDRTDAVICFNDMVALGFIQQARLSGVRVPHDVAVVGFDNTEISVLSTPSLTT
VAGPLRAVGRVATANLIALLKGMKAPLMAKPRELPTRLIVRESSLKTAVDLKRGS

Sequences:

>Translated_375_residues
MTDSGAHSDSKATIYDVAKVAGVSPSTVSRAFSQPGRVSFSTAEKIRNAARQVGYGRRVETPAFQRQNTGIIAMVAADAS
NPFFLEIFQGAQHAASTQGYTVALVDARESAIKSREVLDKIVPHADGLLLAASRMDSGEIHKVAREIPTVLISREVQGIP
SVMVDNYDGAAKAVVHLVDQGCHSITYIAGPNKSWADATRWRGLVDAASSLAAAVEGGVASTSAISISRSVTVQPGRMRH
LIKPKMNTISVDSPDFVGGRRAFEEWAKDRTDAVICFNDMVALGFIQQARLSGVRVPHDVAVVGFDNTEISVLSTPSLTT
VAGPLRAVGRVATANLIALLKGMKAPLMAKPRELPTRLIVRESSLKTAVDLKRGS
>Mature_374_residues
TDSGAHSDSKATIYDVAKVAGVSPSTVSRAFSQPGRVSFSTAEKIRNAARQVGYGRRVETPAFQRQNTGIIAMVAADASN
PFFLEIFQGAQHAASTQGYTVALVDARESAIKSREVLDKIVPHADGLLLAASRMDSGEIHKVAREIPTVLISREVQGIPS
VMVDNYDGAAKAVVHLVDQGCHSITYIAGPNKSWADATRWRGLVDAASSLAAAVEGGVASTSAISISRSVTVQPGRMRHL
IKPKMNTISVDSPDFVGGRRAFEEWAKDRTDAVICFNDMVALGFIQQARLSGVRVPHDVAVVGFDNTEISVLSTPSLTTV
AGPLRAVGRVATANLIALLKGMKAPLMAKPRELPTRLIVRESSLKTAVDLKRGS

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790369, Length=368, Percent_Identity=29.0760869565217, Blast_Score=149, Evalue=4e-37,
Organism=Escherichia coli, GI1789202, Length=321, Percent_Identity=27.1028037383178, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1790194, Length=336, Percent_Identity=25.8928571428571, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1788474, Length=327, Percent_Identity=26.2996941896024, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1787948, Length=334, Percent_Identity=26.3473053892216, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787906, Length=198, Percent_Identity=31.8181818181818, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789068, Length=358, Percent_Identity=24.5810055865922, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787580, Length=351, Percent_Identity=23.6467236467236, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI48994940, Length=355, Percent_Identity=22.5352112676056, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 39897; Mature: 39766

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDSGAHSDSKATIYDVAKVAGVSPSTVSRAFSQPGRVSFSTAEKIRNAARQVGYGRRVE
CCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCCCCC
TPAFQRQNTGIIAMVAADASNPFFLEIFQGAQHAASTQGYTVALVDARESAIKSREVLDK
CCCHHCCCCCEEEEEEECCCCCEEEEEHHCHHHHCCCCCCEEEEECCHHHHHHHHHHHHH
IVPHADGLLLAASRMDSGEIHKVAREIPTVLISREVQGIPSVMVDNYDGAAKAVVHLVDQ
HCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHC
GCHSITYIAGPNKSWADATRWRGLVDAASSLAAAVEGGVASTSAISISRSVTVQPGRMRH
CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCHHHHH
LIKPKMNTISVDSPDFVGGRRAFEEWAKDRTDAVICFNDMVALGFIQQARLSGVRVPHDV
HHCCCCCEEECCCCCCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCE
AVVGFDNTEISVLSTPSLTTVAGPLRAVGRVATANLIALLKGMKAPLMAKPRELPTRLIV
EEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCEEEE
RESSLKTAVDLKRGS
ECCCHHHHHCCCCCC
>Mature Secondary Structure 
TDSGAHSDSKATIYDVAKVAGVSPSTVSRAFSQPGRVSFSTAEKIRNAARQVGYGRRVE
CCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCCCCC
TPAFQRQNTGIIAMVAADASNPFFLEIFQGAQHAASTQGYTVALVDARESAIKSREVLDK
CCCHHCCCCCEEEEEEECCCCCEEEEEHHCHHHHCCCCCCEEEEECCHHHHHHHHHHHHH
IVPHADGLLLAASRMDSGEIHKVAREIPTVLISREVQGIPSVMVDNYDGAAKAVVHLVDQ
HCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHC
GCHSITYIAGPNKSWADATRWRGLVDAASSLAAAVEGGVASTSAISISRSVTVQPGRMRH
CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCHHHHH
LIKPKMNTISVDSPDFVGGRRAFEEWAKDRTDAVICFNDMVALGFIQQARLSGVRVPHDV
HHCCCCCEEECCCCCCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCE
AVVGFDNTEISVLSTPSLTTVAGPLRAVGRVATANLIALLKGMKAPLMAKPRELPTRLIV
EEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCEEEE
RESSLKTAVDLKRGS
ECCCHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]