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The map label for this gene is amyD [H]

Identifier: 145296452

GI number: 145296452

Start: 2600372

End: 2601313

Strand: Reverse

Name: amyD [H]

Synonym: cgR_2365

Alternate gene names: 145296452

Gene position: 2601313-2600372 (Counterclockwise)

Preceding gene: 145296453

Following gene: 145296451

Centisome position: 78.49

GC content: 54.03

Gene sequence:

>942_bases
GTGCGCGAGCAGTTATTCCACATCCTCAGCCTCCTCTCCTCACCGCCTTCCCCGCTGGGAAACGTGTGGCACCACCTGAA
ATTAAGGTTTCACCACCATGCAAGCAACGCTGAAGAAGTACTTCCCAGTCTTTGTCTTGCCCACCCTTCTGGCATTCATG
ATTGCCTTCTTGGTGCCGTTCATCGTGGGTTTCTTCCTCTCCTTTACGAAGTTCACCACTATCACCAACGCCAAGTGGGT
TGGCATAGACAACTACGTCAAAGCTTTCTCCCAACGCGAAGGTTTCATCTCAGCCTTCGGTTTCACCGTCCTCGTGGTCA
TCGTCTCCGTGATCACAGTCAACATCTTCGCCTTCCTCTTGGCGTGGTTGCTGACCCGCAAACTCCGCGGTACCAACTTT
TTCCGCACATCTTCTTTATGCCGAACCTTATCGGCGGCATTGTGCTGGGTTATACCTGGCAGACCATGATCAACGCCGTG
CTTTCGCACTATGCCACGACTATTAGCGCGGACTGGAAATTCGGCTACGCCGGCCTCATCATGCTACTTAACTGGCAGCT
CATCGGCTACATGATGATCATTTACATCGCCGGCCTGCAAAACGTCCCACCAGAGCTCATTGAGGCTGCCGAACTCGACG
GCGTCAACAAGTGGGAGATGCTGCGGCACGTCACTATTCCGATGGTCATGCCATCCATCACCATCTGCCTCTTTTTGACT
TTGTCGAACTCCTTTAAGCTCTTCGACCAGAACCTGGCGCTGACCAACGGCGCTCCTGGCGGGCAAACTGAGATGGTGGC
GCTCAACATCATCAACACGCTGTTTAACCGTATGAATGTCGAGGGCGTCGGTCAGGCCAAGGCCGTTATCTTCGTCGTCG
TTGTGGTCGTCATCGCGTACTTCCAGCTGCGCGCGACCCGCTCCAAGGAAATCGAGGCTTAA

Upstream 100 bases:

>100_bases
TGGGGCTAAAGCTCTATTCCCGTCCCCCTCGCCACACTCCTTCCAATAGCGGAGGGCGGGGAGGGGAGTAGGTGAGGGTT
GTGGCCCGCGTCGCGAGCTT

Downstream 100 bases:

>100_bases
GTTATGACTACCAGCACTTCAGCGCAGGCCGCTCCGACCTCGAAGAAGAAGGATCACCAGCTTCCCTCGGATAATAAGAC
CCACATGTCTGGCAGCGCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MREQLFHILSLLSSPPSPLGNVWHHLKLRFHHHASNAEEVLPSLCLAHPSGIHDCLLGAVHRGFLPLLYEVHHYHQRQVG
WHRQLRQSFLPTRRFHLSLRFHRPRGHRLRDHSQHLRLPLGVVADPQTPRYQLFPHIFFMPNLIGGIVLGYTWQTMINAV
LSHYATTISADWKFGYAGLIMLLNWQLIGYMMIIYIAGLQNVPPELIEAAELDGVNKWEMLRHVTIPMVMPSITICLFLT
LSNSFKLFDQNLALTNGAPGGQTEMVALNIINTLFNRMNVEGVGQAKAVIFVVVVVVIAYFQLRATRSKEIEA

Sequences:

>Translated_313_residues
MREQLFHILSLLSSPPSPLGNVWHHLKLRFHHHASNAEEVLPSLCLAHPSGIHDCLLGAVHRGFLPLLYEVHHYHQRQVG
WHRQLRQSFLPTRRFHLSLRFHRPRGHRLRDHSQHLRLPLGVVADPQTPRYQLFPHIFFMPNLIGGIVLGYTWQTMINAV
LSHYATTISADWKFGYAGLIMLLNWQLIGYMMIIYIAGLQNVPPELIEAAELDGVNKWEMLRHVTIPMVMPSITICLFLT
LSNSFKLFDQNLALTNGAPGGQTEMVALNIINTLFNRMNVEGVGQAKAVIFVVVVVVIAYFQLRATRSKEIEA
>Mature_313_residues
MREQLFHILSLLSSPPSPLGNVWHHLKLRFHHHASNAEEVLPSLCLAHPSGIHDCLLGAVHRGFLPLLYEVHHYHQRQVG
WHRQLRQSFLPTRRFHLSLRFHRPRGHRLRDHSQHLRLPLGVVADPQTPRYQLFPHIFFMPNLIGGIVLGYTWQTMINAV
LSHYATTISADWKFGYAGLIMLLNWQLIGYMMIIYIAGLQNVPPELIEAAELDGVNKWEMLRHVTIPMVMPSITICLFLT
LSNSFKLFDQNLALTNGAPGGQTEMVALNIINTLFNRMNVEGVGQAKAVIFVVVVVVIAYFQLRATRSKEIEA

Specific function: Probably part of a binding-protein-dependent transport system starch degradation products. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35742; Mature: 35742

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHCCCCCCCC
>Mature Secondary Structure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HHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1874408 [H]