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The map label for this gene is ybiO [H]

Identifier: 145296436

GI number: 145296436

Start: 2586436

End: 2587440

Strand: Direct

Name: ybiO [H]

Synonym: cgR_2350

Alternate gene names: 145296436

Gene position: 2586436-2587440 (Clockwise)

Preceding gene: 145296433

Following gene: 145296437

Centisome position: 78.04

GC content: 54.03

Gene sequence:

>1005_bases
ATGATTATCGCTAGTACAGATACAGAAAGTATTGTTACCGACGTTTCTAATTGGTGGGATAACCCCCTCACCCAGGATTG
GTTGATCAATAAGCCAATCAGCATTGCCATCACCATTGTTGTGGCGTTTTTTGCCCATTGGTTGTTGCGCAAGCTCATCA
CCAAAGCCGTGGAGCGCGGCGTGAGAAAGCCGCCAAAGACTGAAGTCCCGCGGTTTTTAGTCAAGGGTCAGGCAAAGAAG
ACAGACATTCCGCCTGAAGTCCAGATCATGAGGAAGACCCAAGAGCAGCGTCGACAAGCAAGAATCCGCACTCTGGGTGC
GGTGGGCAAGTCCGCTGTCGCCATTTTTGTGTGGTCGTGGGCGGCGCTGGCCATCTTGACTGAAATCGGACTTAATGTGG
CGCCCCTGATCGCCTCGGCAGGTGTGGCTGGTGTTGCGCTTGGTTTTGGCGCACAGTCGCTGGTGAAGGACTTTCTCAGC
GGTATTTTTATGCTCATTGAGGATCAATACGGTGTCGGCGACACGATCGATGTCGGTGACGGCATTATCGGCGACGTGGA
GGACATTAGCCTGCGCACCACCACGTTGCGCGATTTGGACGGTACCGTGTGGTACATCCGCAACGGTGAAATTCTGCGTG
TGGGTAACTTCTCCAATGAGTACGCGATTGCTCGATTTGAGGTGCCGGTGGGGCTGTCCAATGACAGCGACCGCGCGTGG
GATGTTATTGAAAATTCCTTCCAGGAGGCCGTCAAGATGGAGGCTATTAAGGATTCCGTCATCGACACACCTGAGATGAA
GGGCATCTCTGCATTCGAACCTGATCATATGACATTCCGCGGTGTGGTCAAGACGCTGCCCGGTTACCAGTGGGAGGTGC
AGCGCTACGTCTACGCCAAGGTATTGTCCGACATGCAAAAAGAAGGCATCACCACGCCCTATCCACACGGCATGGGCGGA
GTAGGCCTGGCACAGCAGACGCTGGATAAAGGCGACGCCAACTAA

Upstream 100 bases:

>100_bases
TCTCACCGCGACGAACAGAGACGTGATCAAAACTTAAAGCAGATGAATTCATGGACACAACGGTAGCGAGTCTTAGGCAC
TATCACTATCGTGGGCACCG

Downstream 100 bases:

>100_bases
ACATTAGGACGCCAAACATTAGGATTGGAGGCATGACCACCTCCGAGAACTTTTATGACACCGTGGGCGGTGAGGAGACC
TTCTCCTTCATCGTCCACCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MIIASTDTESIVTDVSNWWDNPLTQDWLINKPISIAITIVVAFFAHWLLRKLITKAVERGVRKPPKTEVPRFLVKGQAKK
TDIPPEVQIMRKTQEQRRQARIRTLGAVGKSAVAIFVWSWAALAILTEIGLNVAPLIASAGVAGVALGFGAQSLVKDFLS
GIFMLIEDQYGVGDTIDVGDGIIGDVEDISLRTTTLRDLDGTVWYIRNGEILRVGNFSNEYAIARFEVPVGLSNDSDRAW
DVIENSFQEAVKMEAIKDSVIDTPEMKGISAFEPDHMTFRGVVKTLPGYQWEVQRYVYAKVLSDMQKEGITTPYPHGMGG
VGLAQQTLDKGDAN

Sequences:

>Translated_334_residues
MIIASTDTESIVTDVSNWWDNPLTQDWLINKPISIAITIVVAFFAHWLLRKLITKAVERGVRKPPKTEVPRFLVKGQAKK
TDIPPEVQIMRKTQEQRRQARIRTLGAVGKSAVAIFVWSWAALAILTEIGLNVAPLIASAGVAGVALGFGAQSLVKDFLS
GIFMLIEDQYGVGDTIDVGDGIIGDVEDISLRTTTLRDLDGTVWYIRNGEILRVGNFSNEYAIARFEVPVGLSNDSDRAW
DVIENSFQEAVKMEAIKDSVIDTPEMKGISAFEPDHMTFRGVVKTLPGYQWEVQRYVYAKVLSDMQKEGITTPYPHGMGG
VGLAQQTLDKGDAN
>Mature_334_residues
MIIASTDTESIVTDVSNWWDNPLTQDWLINKPISIAITIVVAFFAHWLLRKLITKAVERGVRKPPKTEVPRFLVKGQAKK
TDIPPEVQIMRKTQEQRRQARIRTLGAVGKSAVAIFVWSWAALAILTEIGLNVAPLIASAGVAGVALGFGAQSLVKDFLS
GIFMLIEDQYGVGDTIDVGDGIIGDVEDISLRTTTLRDLDGTVWYIRNGEILRVGNFSNEYAIARFEVPVGLSNDSDRAW
DVIENSFQEAVKMEAIKDSVIDTPEMKGISAFEPDHMTFRGVVKTLPGYQWEVQRYVYAKVLSDMQKEGITTPYPHGMGG
VGLAQQTLDKGDAN

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI87081787, Length=214, Percent_Identity=30.8411214953271, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1789291, Length=206, Percent_Identity=27.6699029126214, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 36867; Mature: 36867

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIASTDTESIVTDVSNWWDNPLTQDWLINKPISIAITIVVAFFAHWLLRKLITKAVERG
CEEECCCHHHHHHHHHHHCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRKPPKTEVPRFLVKGQAKKTDIPPEVQIMRKTQEQRRQARIRTLGAVGKSAVAIFVWSW
CCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
AALAILTEIGLNVAPLIASAGVAGVALGFGAQSLVKDFLSGIFMLIEDQYGVGDTIDVGD
HHHHHHHHHCCCHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCC
GIIGDVEDISLRTTTLRDLDGTVWYIRNGEILRVGNFSNEYAIARFEVPVGLSNDSDRAW
CCCCCCCCCEEEEHHHHCCCCEEEEEECCCEEEECCCCCCEEEEEEEECCCCCCCCCHHH
DVIENSFQEAVKMEAIKDSVIDTPEMKGISAFEPDHMTFRGVVKTLPGYQWEVQRYVYAK
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH
VLSDMQKEGITTPYPHGMGGVGLAQQTLDKGDAN
HHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MIIASTDTESIVTDVSNWWDNPLTQDWLINKPISIAITIVVAFFAHWLLRKLITKAVERG
CEEECCCHHHHHHHHHHHCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRKPPKTEVPRFLVKGQAKKTDIPPEVQIMRKTQEQRRQARIRTLGAVGKSAVAIFVWSW
CCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
AALAILTEIGLNVAPLIASAGVAGVALGFGAQSLVKDFLSGIFMLIEDQYGVGDTIDVGD
HHHHHHHHHCCCHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCC
GIIGDVEDISLRTTTLRDLDGTVWYIRNGEILRVGNFSNEYAIARFEVPVGLSNDSDRAW
CCCCCCCCCEEEEHHHHCCCCEEEEEECCCEEEECCCCCCEEEEEEEECCCCCCCCCHHH
DVIENSFQEAVKMEAIKDSVIDTPEMKGISAFEPDHMTFRGVVKTLPGYQWEVQRYVYAK
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH
VLSDMQKEGITTPYPHGMGGVGLAQQTLDKGDAN
HHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]