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The map label for this gene is mdcF [H]

Identifier: 145296279

GI number: 145296279

Start: 2421995

End: 2422924

Strand: Reverse

Name: mdcF [H]

Synonym: cgR_2196

Alternate gene names: 145296279

Gene position: 2422924-2421995 (Counterclockwise)

Preceding gene: 145296280

Following gene: 145296278

Centisome position: 73.11

GC content: 51.61

Gene sequence:

>930_bases
ATGCAACAGGTGCTCATGGGTTTCACGGTGGTGTTCATCGTCATCGGAATAGGTTGGATTCTCGGTAGAAGAGACACCTT
GGGCACACATGCCCAGAAACCTTTGAGCCTGTTTGTCTATTACGTGGCCACCCCAGCGTTGTTGTTTGATCGGGTCACCA
AGTCAGATACCTCGACGATTTTCTCTCTGAACTTCGTTGTCATTGCACTCTCTGCGTTGATCGTAGGTTTCCTGTTTTTC
CTACTCATGCGGTTCGTGATCAAAAGAACTGCCGCAGTATCGGTGATCGGTATGCTAGCTGCGTCCTACGCCAACGCCGG
TAACCTGGGTATCCCTTTGGCAGCCTATATTTTGGATGATTTCACCGTGGTGATTCCCGTGATTTTGTTCCAGGTGGCGT
TCTACGCACCGATCACCATGACCATCATGGAGATGCTGACCAACAAGAAATCCACCAACTTGGTGCGCAACCTCCTGGTC
ACGCCACTAACCAACACCATGGTGCTCGCAGCGATTGCCGGTATTGCTGTGTCTTTGACTTCGATGAGCGTGCCCGTGGT
GATTGCTCAGCCAGTGGAAATGTTGGCGAATGCTTCAGTGCCACTGGCTTTGGTGGTGTTCGGACTGTCCTTGTCCAAGA
GCAAGATCCTGGAAAAGGGGCATGTATCCAGGCGCGATGTGTTTACGGCGGCACTGTTCAAGAATGTTCTGCACCCAATT
GTTGCGGGACTTTTAGCCTTAGCCTTTGGTATGGAAGGTACTGCCTTGTTGTCGGCGGTGATTCTCGGTGCACTGCCAAC
AGCGCAGAATGTCTACACCTACGCGTTGCGATTTAGAACAGCTGAATCGATGGCGAGAGACACGGGGGTGGTCACCACAC
TCATTTCCTTCCCCGTATTGGTGGCGGTCTCCATTATCTTTGGATCTTAG

Upstream 100 bases:

>100_bases
GCCGCACCCAGATCGAACAAGGCACCGGAAAACAAGCAACGCACCTTGCAGAGGTGGTCTTAAGCATCTTGGAGCAAAAC
AACATGGCACAATAACGATC

Downstream 100 bases:

>100_bases
GGTTAGCATTAGTGGTCATGAATGCAGTCAAAGTGCGCACCGGTGTGCCGGCGCTGATGAGATCTAAAGCGATGTTTACG
TGCATCCTTTTTGTGCTCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MQQVLMGFTVVFIVIGIGWILGRRDTLGTHAQKPLSLFVYYVATPALLFDRVTKSDTSTIFSLNFVVIALSALIVGFLFF
LLMRFVIKRTAAVSVIGMLAASYANAGNLGIPLAAYILDDFTVVIPVILFQVAFYAPITMTIMEMLTNKKSTNLVRNLLV
TPLTNTMVLAAIAGIAVSLTSMSVPVVIAQPVEMLANASVPLALVVFGLSLSKSKILEKGHVSRRDVFTAALFKNVLHPI
VAGLLALAFGMEGTALLSAVILGALPTAQNVYTYALRFRTAESMARDTGVVTTLISFPVLVAVSIIFGS

Sequences:

>Translated_309_residues
MQQVLMGFTVVFIVIGIGWILGRRDTLGTHAQKPLSLFVYYVATPALLFDRVTKSDTSTIFSLNFVVIALSALIVGFLFF
LLMRFVIKRTAAVSVIGMLAASYANAGNLGIPLAAYILDDFTVVIPVILFQVAFYAPITMTIMEMLTNKKSTNLVRNLLV
TPLTNTMVLAAIAGIAVSLTSMSVPVVIAQPVEMLANASVPLALVVFGLSLSKSKILEKGHVSRRDVFTAALFKNVLHPI
VAGLLALAFGMEGTALLSAVILGALPTAQNVYTYALRFRTAESMARDTGVVTTLISFPVLVAVSIIFGS
>Mature_309_residues
MQQVLMGFTVVFIVIGIGWILGRRDTLGTHAQKPLSLFVYYVATPALLFDRVTKSDTSTIFSLNFVVIALSALIVGFLFF
LLMRFVIKRTAAVSVIGMLAASYANAGNLGIPLAAYILDDFTVVIPVILFQVAFYAPITMTIMEMLTNKKSTNLVRNLLV
TPLTNTMVLAAIAGIAVSLTSMSVPVVIAQPVEMLANASVPLALVVFGLSLSKSKILEKGHVSRRDVFTAALFKNVLHPI
VAGLLALAFGMEGTALLSAVILGALPTAQNVYTYALRFRTAESMARDTGVVTTLISFPVLVAVSIIFGS

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the auxin efflux carrier (TC 2.A.69) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004776 [H]

Pfam domain/function: PF03547 Mem_trans [H]

EC number: NA

Molecular weight: Translated: 33064; Mature: 33064

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQVLMGFTVVFIVIGIGWILGRRDTLGTHAQKPLSLFVYYVATPALLFDRVTKSDTSTI
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHH
FSLNFVVIALSALIVGFLFFLLMRFVIKRTAAVSVIGMLAASYANAGNLGIPLAAYILDD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
FTVVIPVILFQVAFYAPITMTIMEMLTNKKSTNLVRNLLVTPLTNTMVLAAIAGIAVSLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
SMSVPVVIAQPVEMLANASVPLALVVFGLSLSKSKILEKGHVSRRDVFTAALFKNVLHPI
HCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH
VAGLLALAFGMEGTALLSAVILGALPTAQNVYTYALRFRTAESMARDTGVVTTLISFPVL
HHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAVSIIFGS
HHHHHHHCC
>Mature Secondary Structure
MQQVLMGFTVVFIVIGIGWILGRRDTLGTHAQKPLSLFVYYVATPALLFDRVTKSDTSTI
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHH
FSLNFVVIALSALIVGFLFFLLMRFVIKRTAAVSVIGMLAASYANAGNLGIPLAAYILDD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
FTVVIPVILFQVAFYAPITMTIMEMLTNKKSTNLVRNLLVTPLTNTMVLAAIAGIAVSLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
SMSVPVVIAQPVEMLANASVPLALVVFGLSLSKSKILEKGHVSRRDVFTAALFKNVLHPI
HCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH
VAGLLALAFGMEGTALLSAVILGALPTAQNVYTYALRFRTAESMARDTGVVTTLISFPVL
HHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAVSIIFGS
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10858449; 11481430 [H]