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The map label for this gene is rnaSA [H]

Identifier: 145296224

GI number: 145296224

Start: 2363473

End: 2363937

Strand: Direct

Name: rnaSA [H]

Synonym: cgR_2141

Alternate gene names: 145296224

Gene position: 2363473-2363937 (Clockwise)

Preceding gene: 145296222

Following gene: 145296225

Centisome position: 71.31

GC content: 51.4

Gene sequence:

>465_bases
GTGCTCGGAGTCATCGTTGTCCTCGCTGCTGCATGGTTTGGAATTGATCTGTCCACTTCAGGTGAAGCCACCAGCCAAGC
ATCAAGCTCAGCAACTACTACCACTATTACTAGCTCTAACACTCCAACATCTGAGTCCATTTCCAGCAACAGCGACTTAA
ACGGTGACAGCTGCTCCATGAGTGAGCTGCCACAAGAAGCTGATGAGGTGGTCGACGATATTCTCGCCGGTGGTCCTTTT
GATTACCCAGACAATGACGGCGTGCGCTTTGGAAACTACGAAGGCGTACTACCGAAAGAGTCCAGCAACTACTACCGCGA
ATACACCGTGGAAACCCCAGGACTTAGCCACCGCGGTCCACTGCGTATTGTCACCGGTGGATCAAACCCAACTGATCCAG
AGGTGTGGTACTACACCTCAGATCACTATGAAACTTTCTGTGCCATCACCGATGCGGAGAACTAA

Upstream 100 bases:

>100_bases
TTTCCGGAATACGTCCCTTTGCCATGACCATCACTTTAGCCCGTCCCTTTAGTGTGCCTATATTGGTTGTATGCAAAACA
GCAAGAAGACCCTCAGCGGA

Downstream 100 bases:

>100_bases
ATGAATATCGTCTTGCAGGGATCGTTTAGCACTCGACAGGAGTTCTTTGATCTCCTCGGTGCCGCTGCCTGGGGTGTGGA
ACGACCAGCGCCAACCAATC

Product: hypothetical protein

Products: NA

Alternate protein names: RNase Sa [H]

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MLGVIVVLAAAWFGIDLSTSGEATSQASSSATTTTITSSNTPTSESISSNSDLNGDSCSMSELPQEADEVVDDILAGGPF
DYPDNDGVRFGNYEGVLPKESSNYYREYTVETPGLSHRGPLRIVTGGSNPTDPEVWYYTSDHYETFCAITDAEN

Sequences:

>Translated_154_residues
MLGVIVVLAAAWFGIDLSTSGEATSQASSSATTTTITSSNTPTSESISSNSDLNGDSCSMSELPQEADEVVDDILAGGPF
DYPDNDGVRFGNYEGVLPKESSNYYREYTVETPGLSHRGPLRIVTGGSNPTDPEVWYYTSDHYETFCAITDAEN
>Mature_154_residues
MLGVIVVLAAAWFGIDLSTSGEATSQASSSATTTTITSSNTPTSESISSNSDLNGDSCSMSELPQEADEVVDDILAGGPF
DYPDNDGVRFGNYEGVLPKESSNYYREYTVETPGLSHRGPLRIVTGGSNPTDPEVWYYTSDHYETFCAITDAEN

Specific function: Unknown

COG id: COG4290

COG function: function code F; Guanyl-specific ribonuclease Sa

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribonuclease N1/T1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000026
- InterPro:   IPR016191 [H]

Pfam domain/function: PF00545 Ribonuclease [H]

EC number: =3.1.27.3 [H]

Molecular weight: Translated: 16455; Mature: 16455

Theoretical pI: Translated: 3.65; Mature: 3.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGVIVVLAAAWFGIDLSTSGEATSQASSSATTTTITSSNTPTSESISSNSDLNGDSCSM
CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCH
SELPQEADEVVDDILAGGPFDYPDNDGVRFGNYEGVLPKESSNYYREYTVETPGLSHRGP
HHCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCC
LRIVTGGSNPTDPEVWYYTSDHYETFCAITDAEN
EEEEECCCCCCCCEEEEEECCCCEEEEEEECCCC
>Mature Secondary Structure
MLGVIVVLAAAWFGIDLSTSGEATSQASSSATTTTITSSNTPTSESISSNSDLNGDSCSM
CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCH
SELPQEADEVVDDILAGGPFDYPDNDGVRFGNYEGVLPKESSNYYREYTVETPGLSHRGP
HHCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCC
LRIVTGGSNPTDPEVWYYTSDHYETFCAITDAEN
EEEEECCCCCCCCEEEEEECCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3098582; 3118883; 1654932; 8396032; 9757110; 9819211; 11455593 [H]