Click here to switch to the map view.

The map label for this gene is rarD [H]

Identifier: 145296092

GI number: 145296092

Start: 2216015

End: 2216863

Strand: Direct

Name: rarD [H]

Synonym: cgR_2014

Alternate gene names: 145296092

Gene position: 2216015-2216863 (Clockwise)

Preceding gene: 145296089

Following gene: 145296094

Centisome position: 66.86

GC content: 48.76

Gene sequence:

>849_bases
ATGATCTACGGCGTAATCGCTTACCTAGGATGGGGCATGTTCCCAGCATTTTTCCCACTCCTTCTTCCAGCTGAGCCGAT
TGAAATTTTGGCGCATCGAATCCTCTGGACCGCCGTGTTGATGATGATCATTATCAGTGTCACCAAGGGCTGGAAAGAGC
TAAAAAACGCTGACCGCGGAACCTGGTTGCGCATCGTGCTGGCGTCGTTGTTTATCGCCGGAAACTGGCTGATCTATGTC
ATTGCTGTCAACTCTGGCCACGTCACTGAAGCCGCGTTGGGATACTTTATTAATCCACTGGTCAGCGTGGTGTTTGGCAT
TGTGTTCTTTAAGGAGCAATTGCGCAAACTGCAGATGAGTGCGGTAATTATTGCGCTTGCCGGTGTTTTGGTGCTGACAT
TCTTGAGCGGTCAACCGCCCTATCTGGCGCTGTCGCTGGCGTTTACCTTCGGTGTTTATGGAGCGCTCAAGAAACAAGTA
AACATGTCGGCGATTGGTTCACTTACAGCTGAAACTTTGGTACTGCTTCCCATTGCCATTGTCTACTTGATCTGGCTTGA
AACCTCAGGCCAAGGCACTTTCTTTAACAACGGTGGCGAACACATCGCGTTGTTGGTCAGCTCTGGTTTGGTCACAGCCG
TCCCGCTGTTGATGTTTGCATTGGCTGCCAAGGAAATACCTCTTTCCACTGTCGGCATGCTCCAATATCTAACCCCAACG
ATGCAGATGCTGTGGGCATTGTTTGTGGTCAACGAATCAGTAGAACCAATGCGTTGGTTCGGATTCGTTTTCATTTGGGT
TGCAATTACTATTTACATTACAGATAGCCTACTAAAGAATCGGCAATAG

Upstream 100 bases:

>100_bases
CCATGTGGGACAGTCTAGCCATCTCCTTACACGGGTGAAACTTCCCTTAAATTGGGCATGTGAACACGGATTTCTGCACC
TAGGTATAAGGTGACCTTTT

Downstream 100 bases:

>100_bases
CAGTCTCAATATATATCCACGTTTATTAGGAATCTATTCGCATTTTGAAACCGCATCATTAAAAATTGGAACCCTGTTTA
CATCTAAGAAGCTAAAGTGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MIYGVIAYLGWGMFPAFFPLLLPAEPIEILAHRILWTAVLMMIIISVTKGWKELKNADRGTWLRIVLASLFIAGNWLIYV
IAVNSGHVTEAALGYFINPLVSVVFGIVFFKEQLRKLQMSAVIIALAGVLVLTFLSGQPPYLALSLAFTFGVYGALKKQV
NMSAIGSLTAETLVLLPIAIVYLIWLETSGQGTFFNNGGEHIALLVSSGLVTAVPLLMFALAAKEIPLSTVGMLQYLTPT
MQMLWALFVVNESVEPMRWFGFVFIWVAITIYITDSLLKNRQ

Sequences:

>Translated_282_residues
MIYGVIAYLGWGMFPAFFPLLLPAEPIEILAHRILWTAVLMMIIISVTKGWKELKNADRGTWLRIVLASLFIAGNWLIYV
IAVNSGHVTEAALGYFINPLVSVVFGIVFFKEQLRKLQMSAVIIALAGVLVLTFLSGQPPYLALSLAFTFGVYGALKKQV
NMSAIGSLTAETLVLLPIAIVYLIWLETSGQGTFFNNGGEHIALLVSSGLVTAVPLLMFALAAKEIPLSTVGMLQYLTPT
MQMLWALFVVNESVEPMRWFGFVFIWVAITIYITDSLLKNRQ
>Mature_282_residues
MIYGVIAYLGWGMFPAFFPLLLPAEPIEILAHRILWTAVLMMIIISVTKGWKELKNADRGTWLRIVLASLFIAGNWLIYV
IAVNSGHVTEAALGYFINPLVSVVFGIVFFKEQLRKLQMSAVIIALAGVLVLTFLSGQPPYLALSLAFTFGVYGALKKQV
NMSAIGSLTAETLVLLPIAIVYLIWLETSGQGTFFNNGGEHIALLVSSGLVTAVPLLMFALAAKEIPLSTVGMLQYLTPT
MQMLWALFVVNESVEPMRWFGFVFIWVAITIYITDSLLKNRQ

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=278, Percent_Identity=39.2086330935252, Blast_Score=200, Evalue=7e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 31151; Mature: 31151

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYGVIAYLGWGMFPAFFPLLLPAEPIEILAHRILWTAVLMMIIISVTKGWKELKNADRG
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TWLRIVLASLFIAGNWLIYVIAVNSGHVTEAALGYFINPLVSVVFGIVFFKEQLRKLQMS
HHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVIIALAGVLVLTFLSGQPPYLALSLAFTFGVYGALKKQVNMSAIGSLTAETLVLLPIAI
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VYLIWLETSGQGTFFNNGGEHIALLVSSGLVTAVPLLMFALAAKEIPLSTVGMLQYLTPT
HHHHHHEECCCCCEECCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
MQMLWALFVVNESVEPMRWFGFVFIWVAITIYITDSLLKNRQ
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIYGVIAYLGWGMFPAFFPLLLPAEPIEILAHRILWTAVLMMIIISVTKGWKELKNADRG
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TWLRIVLASLFIAGNWLIYVIAVNSGHVTEAALGYFINPLVSVVFGIVFFKEQLRKLQMS
HHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVIIALAGVLVLTFLSGQPPYLALSLAFTFGVYGALKKQVNMSAIGSLTAETLVLLPIAI
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VYLIWLETSGQGTFFNNGGEHIALLVSSGLVTAVPLLMFALAAKEIPLSTVGMLQYLTPT
HHHHHHEECCCCCEECCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
MQMLWALFVVNESVEPMRWFGFVFIWVAITIYITDSLLKNRQ
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA