Click here to switch to the map view.

The map label for this gene is ydiU [C]

Identifier: 145295903

GI number: 145295903

Start: 2030264

End: 2031688

Strand: Direct

Name: ydiU [C]

Synonym: cgR_1828

Alternate gene names: 145295903

Gene position: 2030264-2031688 (Clockwise)

Preceding gene: 145295899

Following gene: 145295906

Centisome position: 61.26

GC content: 54.39

Gene sequence:

>1425_bases
ATGAATACTGCACCTTTCAAACTCGAAGCTGATTTCGCATCAGCCCTGCCCACCATGGCAGCCCCCTGGCAAGGTGAGGA
ATCCCCCAACCCCGAGCTCGTGATTTTAAATGACGACCTCGCCTACAGCCTCGGGCTTGACCCGACATGGCTTCGCACCC
CTGAGGGTGTTCAATTTCTCCTTGGCCGCAACCCCGAGCCCTTAACAAAAGCAGTTGCACAGGCCTATTCCGGCCACCAA
TTCGGACAATTTGTGGCAAGCCTTGGTGATGGCCGAGCACTCCTCCTCGGTGAGGCCCGCTCAGCTGATGGCGTACTGCA
TGACATCCACCTCAAAGGATCTGGACGAACCCAATTCTCCCGAGGAGCCGATGGACGCGCCGTCCTTGGCCCCGTCTTAC
GCGAATACATCATCTCCGAAGCGATGCATGCACTTGGCGTTCCCACCACCAGGTCACTTGCAGTAATTAGCACCGGTAGG
AAAATCCAACGAGGAAGCGTAGCCCCAGGCGCAGTCCTTGTGCGCGTAGCAACCAGCCTCATTCGAGTCGGATCCTTCCA
ATACTCCAACATCTCTGGTGGCATCGAACTGTCTCAACACCTGGCGAACTATACGATCACCAGGCATTTCCCTTCGTTGG
TAGCTGAACTATCCGCACCAACCCCCGCAACTTATGTATCACTGTTTAAAGCCATTCTTCAGCGCCAAGCAGACACCGTT
GGAAAATGGACCAGGCTGGGTTTCGTTCACGGAGCCCTCAACACAGACAACACGTTGATATCCGGAGAAACTGTTGACTA
CGGCCCATGCGCTTTCATGGAGCGCTACCGTGGCGACGCGAAATTTAGCTCCATCGACACTTATGGTCGCTACAAATTTG
AAAACCAACCTATGATCCTCGGATGGAACATGGCCCGCCTCGTAGAAACCCTCCTCCCACTCCTGGGCGCCACACCAGAC
GAAGGCATGACAGCAGCCCAAGAAGCTCTCGGAGAATTCGATGACCTCTGCGAACAAGCAATCCGAAAAGAATTCGCCAC
TGCACTGGGGCTAGACGAGTCAGACACCGGCACGGTAGAGCAGTTCCGTGAACTGCTCTACCTCCATAACCCCGACATCA
CCACGCTGCTGCGCTCACTCACCGACAACACCGCACCACCGAGTGGCTTTGAAGCATTCGTTCACGACTGGAAAACCCAA
GACCCAGATTTTGAAGCAATGCAAGCAGTAAATCCACTTTTCATTCCACGCAATCACCTCGTGGAAGCTGCCCTCGCAGA
CGCAATTGTAGGGAATCTAGAAAAGTTCCACGAACTACTCGCTGCTGTCACCAATCCTTTTGATCCGACTGCGGGCCCCG
ATGAACTACGTCTGCCAAGCGAAGAAGGATTTGAAGAAGACTACATGACCTTCTGCGGCACCTAG

Upstream 100 bases:

>100_bases
AGGAGACTGGCTGGATTGTTGGTTGGTTTTCTTGGGAAATCATCATGGACTTTAATCCTAGTCCCAACAATTGCAGGAAC
CCGAACACTAGGCTTGAACC

Downstream 100 bases:

>100_bases
GACAGACGTTGGGGGTGCCGCCGCGCAGAGCGCTTCGAACTGCTAGAACTCTGCGATGTTGATCTTCTTCATCGCGAGAA
GCTTTTCAAACGCGCCGGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 474; Mature: 474

Protein sequence:

>474_residues
MNTAPFKLEADFASALPTMAAPWQGEESPNPELVILNDDLAYSLGLDPTWLRTPEGVQFLLGRNPEPLTKAVAQAYSGHQ
FGQFVASLGDGRALLLGEARSADGVLHDIHLKGSGRTQFSRGADGRAVLGPVLREYIISEAMHALGVPTTRSLAVISTGR
KIQRGSVAPGAVLVRVATSLIRVGSFQYSNISGGIELSQHLANYTITRHFPSLVAELSAPTPATYVSLFKAILQRQADTV
GKWTRLGFVHGALNTDNTLISGETVDYGPCAFMERYRGDAKFSSIDTYGRYKFENQPMILGWNMARLVETLLPLLGATPD
EGMTAAQEALGEFDDLCEQAIRKEFATALGLDESDTGTVEQFRELLYLHNPDITTLLRSLTDNTAPPSGFEAFVHDWKTQ
DPDFEAMQAVNPLFIPRNHLVEAALADAIVGNLEKFHELLAAVTNPFDPTAGPDELRLPSEEGFEEDYMTFCGT

Sequences:

>Translated_474_residues
MNTAPFKLEADFASALPTMAAPWQGEESPNPELVILNDDLAYSLGLDPTWLRTPEGVQFLLGRNPEPLTKAVAQAYSGHQ
FGQFVASLGDGRALLLGEARSADGVLHDIHLKGSGRTQFSRGADGRAVLGPVLREYIISEAMHALGVPTTRSLAVISTGR
KIQRGSVAPGAVLVRVATSLIRVGSFQYSNISGGIELSQHLANYTITRHFPSLVAELSAPTPATYVSLFKAILQRQADTV
GKWTRLGFVHGALNTDNTLISGETVDYGPCAFMERYRGDAKFSSIDTYGRYKFENQPMILGWNMARLVETLLPLLGATPD
EGMTAAQEALGEFDDLCEQAIRKEFATALGLDESDTGTVEQFRELLYLHNPDITTLLRSLTDNTAPPSGFEAFVHDWKTQ
DPDFEAMQAVNPLFIPRNHLVEAALADAIVGNLEKFHELLAAVTNPFDPTAGPDELRLPSEEGFEEDYMTFCGT
>Mature_474_residues
MNTAPFKLEADFASALPTMAAPWQGEESPNPELVILNDDLAYSLGLDPTWLRTPEGVQFLLGRNPEPLTKAVAQAYSGHQ
FGQFVASLGDGRALLLGEARSADGVLHDIHLKGSGRTQFSRGADGRAVLGPVLREYIISEAMHALGVPTTRSLAVISTGR
KIQRGSVAPGAVLVRVATSLIRVGSFQYSNISGGIELSQHLANYTITRHFPSLVAELSAPTPATYVSLFKAILQRQADTV
GKWTRLGFVHGALNTDNTLISGETVDYGPCAFMERYRGDAKFSSIDTYGRYKFENQPMILGWNMARLVETLLPLLGATPD
EGMTAAQEALGEFDDLCEQAIRKEFATALGLDESDTGTVEQFRELLYLHNPDITTLLRSLTDNTAPPSGFEAFVHDWKTQ
DPDFEAMQAVNPLFIPRNHLVEAALADAIVGNLEKFHELLAAVTNPFDPTAGPDELRLPSEEGFEEDYMTFCGT

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family

Homologues:

Organism=Homo sapiens, GI32880229, Length=382, Percent_Identity=34.2931937172775, Blast_Score=201, Evalue=1e-51,
Organism=Escherichia coli, GI1787999, Length=441, Percent_Identity=34.4671201814059, Blast_Score=236, Evalue=3e-63,
Organism=Saccharomyces cerevisiae, GI6325034, Length=306, Percent_Identity=34.3137254901961, Blast_Score=172, Evalue=1e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1828_CORGB (A4QF06)

Other databases:

- EMBL:   AP009044
- RefSeq:   YP_001138724.1
- STRING:   A4QF06
- GeneID:   4991921
- GenomeReviews:   AP009044_GR
- KEGG:   cgt:cgR_1828
- eggNOG:   COG0397
- HOGENOM:   HBG683993
- OMA:   RRDIQLK
- ProtClustDB:   CLSK633580
- HAMAP:   MF_00692
- InterPro:   IPR003846

Pfam domain/function: PF02696 UPF0061

EC number: NA

Molecular weight: Translated: 51619; Mature: 51619

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTAPFKLEADFASALPTMAAPWQGEESPNPELVILNDDLAYSLGLDPTWLRTPEGVQFL
CCCCCCEEECHHHHHCCCCCCCCCCCCCCCCCEEEEECCCEEECCCCCCCCCCCCCHHEE
LGRNPEPLTKAVAQAYSGHQFGQFVASLGDGRALLLGEARSADGVLHDIHLKGSGRTQFS
CCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCC
RGADGRAVLGPVLREYIISEAMHALGVPTTRSLAVISTGRKIQRGSVAPGAVLVRVATSL
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEECCCCCCCHHHHHHHHHHH
IRVGSFQYSNISGGIELSQHLANYTITRHFPSLVAELSAPTPATYVSLFKAILQRQADTV
HHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
GKWTRLGFVHGALNTDNTLISGETVDYGPCAFMERYRGDAKFSSIDTYGRYKFENQPMIL
HHHHHHHHEEECCCCCCEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEECCCCEEE
GWNMARLVETLLPLLGATPDEGMTAAQEALGEFDDLCEQAIRKEFATALGLDESDTGTVE
CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
QFRELLYLHNPDITTLLRSLTDNTAPPSGFEAFVHDWKTQDPDFEAMQAVNPLFIPRNHL
HHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCCCHHHH
VEAALADAIVGNLEKFHELLAAVTNPFDPTAGPDELRLPSEEGFEEDYMTFCGT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
>Mature Secondary Structure
MNTAPFKLEADFASALPTMAAPWQGEESPNPELVILNDDLAYSLGLDPTWLRTPEGVQFL
CCCCCCEEECHHHHHCCCCCCCCCCCCCCCCCEEEEECCCEEECCCCCCCCCCCCCHHEE
LGRNPEPLTKAVAQAYSGHQFGQFVASLGDGRALLLGEARSADGVLHDIHLKGSGRTQFS
CCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCC
RGADGRAVLGPVLREYIISEAMHALGVPTTRSLAVISTGRKIQRGSVAPGAVLVRVATSL
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEECCCCCCCHHHHHHHHHHH
IRVGSFQYSNISGGIELSQHLANYTITRHFPSLVAELSAPTPATYVSLFKAILQRQADTV
HHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
GKWTRLGFVHGALNTDNTLISGETVDYGPCAFMERYRGDAKFSSIDTYGRYKFENQPMIL
HHHHHHHHEEECCCCCCEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEECCCCEEE
GWNMARLVETLLPLLGATPDEGMTAAQEALGEFDDLCEQAIRKEFATALGLDESDTGTVE
CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
QFRELLYLHNPDITTLLRSLTDNTAPPSGFEAFVHDWKTQDPDFEAMQAVNPLFIPRNHL
HHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCCCHHHH
VEAALADAIVGNLEKFHELLAAVTNPFDPTAGPDELRLPSEEGFEEDYMTFCGT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA