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The map label for this gene is glpR [H]

Identifier: 145295839

GI number: 145295839

Start: 1960809

End: 1961603

Strand: Direct

Name: glpR [H]

Synonym: cgR_1764

Alternate gene names: 145295839

Gene position: 1960809-1961603 (Clockwise)

Preceding gene: 145295837

Following gene: 145295840

Centisome position: 59.16

GC content: 52.2

Gene sequence:

>795_bases
ATGGTCAGCCAAACGGAAAGACAGCATGCAATTGCTTCTTTACTGGCACCAACTGGTGCGGTGTCTGTAGGAGATTTAGC
CGAGCATTTCCATGTGACAACCGAAACAGTGCGACGTGATCTTCGGATCATGGAGTCACTGGGTTTGTTGCAACGAGTTC
ACGGTGGTGCCATTAGCCCAGAGCCCACGGGTACGTCTCCCCCTCGGCTGAAACCTGCCTTGGTTAAAGGAATGCCACCG
GAACCCCGTGTTTTAGAACTTGCAGAAACTGCAGTTTCCCTCATCACACCTCTAGCACGCAGCATTTTCCTGGATTCAGG
TTTAGCGTGCACGGCGATTGCCACGGTGTTGGGGGATCCTCCAGAAGATGCCAGGTGGACTGTTGTTACAAGTTCCCCCG
GCGCTGTAATTGCCTTGTCCGCGACAGATGCCACCTCCACGGTGGTGCTGCACGGGCAGGTTCACGGTAAGAGTTCTTCA
ATCATTGGGTCCACGGCAGTAGACATGATTTCGCAGTTGCGCGCTGATATCGCCTTCGTGGAGGTTGATGCGATTCAATC
CGATACAGGTCTGTGCACGTTTTTCCCGGAGACGATTCCCATCAAGCAAGCCATGATCAAAAACGCGGCTTTCACAGTTG
CTGTTCTCAGCCCGAGATCACCCCAAGATCAAGAACTTCAACTTTTGAAGCACCCTTTTTCCACCTTGGCTGATTTTGAT
GCCCTTGTTACCGATGACCACACGCTAGATTTTCCAGTTTTGCCCGACCACAACTTTCAGGTGGTAACCCCATGA

Upstream 100 bases:

>100_bases
CCACAATCGGAACCAAAACAACACTGGTCAAAAACCAGTTTCCCGCTTGAACAAAATTCCTTCCACGTCAACACCAACTC
CAACATCAGCGAGGTTAAGC

Downstream 100 bases:

>100_bases
TCATCACATTCACCCCAAACCCGAGTATTGATTCCACGCTGTCGCTCGGCGAAGAGCTCTCCCGTGGATCCGTCCAACGA
CTTGATTCCGTCACCGCTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MVSQTERQHAIASLLAPTGAVSVGDLAEHFHVTTETVRRDLRIMESLGLLQRVHGGAISPEPTGTSPPRLKPALVKGMPP
EPRVLELAETAVSLITPLARSIFLDSGLACTAIATVLGDPPEDARWTVVTSSPGAVIALSATDATSTVVLHGQVHGKSSS
IIGSTAVDMISQLRADIAFVEVDAIQSDTGLCTFFPETIPIKQAMIKNAAFTVAVLSPRSPQDQELQLLKHPFSTLADFD
ALVTDDHTLDFPVLPDHNFQVVTP

Sequences:

>Translated_264_residues
MVSQTERQHAIASLLAPTGAVSVGDLAEHFHVTTETVRRDLRIMESLGLLQRVHGGAISPEPTGTSPPRLKPALVKGMPP
EPRVLELAETAVSLITPLARSIFLDSGLACTAIATVLGDPPEDARWTVVTSSPGAVIALSATDATSTVVLHGQVHGKSSS
IIGSTAVDMISQLRADIAFVEVDAIQSDTGLCTFFPETIPIKQAMIKNAAFTVAVLSPRSPQDQELQLLKHPFSTLADFD
ALVTDDHTLDFPVLPDHNFQVVTP
>Mature_264_residues
MVSQTERQHAIASLLAPTGAVSVGDLAEHFHVTTETVRRDLRIMESLGLLQRVHGGAISPEPTGTSPPRLKPALVKGMPP
EPRVLELAETAVSLITPLARSIFLDSGLACTAIATVLGDPPEDARWTVVTSSPGAVIALSATDATSTVVLHGQVHGKSSS
IIGSTAVDMISQLRADIAFVEVDAIQSDTGLCTFFPETIPIKQAMIKNAAFTVAVLSPRSPQDQELQLLKHPFSTLADFD
ALVTDDHTLDFPVLPDHNFQVVTP

Specific function: Repressor of the glycerol-3-phosphate regulon [H]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789829, Length=215, Percent_Identity=27.906976744186, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1789059, Length=246, Percent_Identity=32.520325203252, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787540, Length=186, Percent_Identity=32.7956989247312, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI226510968, Length=244, Percent_Identity=30.327868852459, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789519, Length=218, Percent_Identity=26.605504587156, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87082344, Length=203, Percent_Identity=26.1083743842365, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 28019; Mature: 28019

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSQTERQHAIASLLAPTGAVSVGDLAEHFHVTTETVRRDLRIMESLGLLQRVHGGAISP
CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
EPTGTSPPRLKPALVKGMPPEPRVLELAETAVSLITPLARSIFLDSGLACTAIATVLGDP
CCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
PEDARWTVVTSSPGAVIALSATDATSTVVLHGQVHGKSSSIIGSTAVDMISQLRADIAFV
CCCCEEEEEECCCCEEEEEEECCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHEEEE
EVDAIQSDTGLCTFFPETIPIKQAMIKNAAFTVAVLSPRSPQDQELQLLKHPFSTLADFD
EEECCCCCCCEEEECCCCCCHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
ALVTDDHTLDFPVLPDHNFQVVTP
HHCCCCCCCCCCCCCCCCEEEECC
>Mature Secondary Structure
MVSQTERQHAIASLLAPTGAVSVGDLAEHFHVTTETVRRDLRIMESLGLLQRVHGGAISP
CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
EPTGTSPPRLKPALVKGMPPEPRVLELAETAVSLITPLARSIFLDSGLACTAIATVLGDP
CCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
PEDARWTVVTSSPGAVIALSATDATSTVVLHGQVHGKSSSIIGSTAVDMISQLRADIAFV
CCCCEEEEEECCCCEEEEEEECCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHEEEE
EVDAIQSDTGLCTFFPETIPIKQAMIKNAAFTVAVLSPRSPQDQELQLLKHPFSTLADFD
EEECCCCCCCEEEECCCCCCHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
ALVTDDHTLDFPVLPDHNFQVVTP
HHCCCCCCCCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8955387; 3045764; 9278503 [H]