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The map label for this gene is yqgF [C]

Identifier: 145295753

GI number: 145295753

Start: 1865072

End: 1865620

Strand: Reverse

Name: yqgF [C]

Synonym: cgR_1679

Alternate gene names: 145295753

Gene position: 1865620-1865072 (Counterclockwise)

Preceding gene: 145295754

Following gene: 145295752

Centisome position: 56.29

GC content: 57.56

Gene sequence:

>549_bases
ATGAAGGTTTCCGCCGATACACCCGGTCACGATGATCCAGGCCCAGGCCGGCGCCTTGGTTTAGATGTCGGCACCGTGCG
CATCGGAGTGGCAGCCTCTGACCGCGATGCCAAGCTTGCCATGCCTGTGGAAACCGTTCCGCGGGAAACTGGATTCAAAG
GGCCAGACCTGGCCGATATTGATCGGTTGGTCGCCATCGTTGAGGAATACAACGCCGTGGAAGTCATTGTTGGTCTACCC
ACAGATCTGCAGGGAAATGGCTCCGCCAGTGTGAAGCATGCAAAGGAAATTGCTTTCCGCGTCCGTCGGCGCCTCACCAA
TGCCGGAAAGAACATTCCGGTACGGCTTGGCGACGAACGCCTCACCACCGTCGTGGCCACCCAAGCCTTGCGGGCCTCAG
GCGTCAGCGAGAAAGCGGGACGCAAAGTTATTGATCAAGCTGCCGCAGTAGAAATCCTTCAAACCTGGTTGGACGCTCGC
ACCCGAGCCCTTGAACCACAAACCACAGACACCCAAGATTTCGACGAGAAGGGAAATTTCCCAGGATGA

Upstream 100 bases:

>100_bases
TTCTTCCGTACGGCTATGCTTAAAAGCTAAATTTGTCTTTGTGCCTTGCAACACATTAATTTCTTAACACTAAACAATGG
AAAGGTAAGCGGGTTTTTCT

Downstream 100 bases:

>100_bases
ACCAAATCCGAAACCGCCGGATGGAGCCCGTCTACGTAAAGCGCCGCCAACGGTTTATTGCCGTGACGATCGCTTCACTC
ATCCTCATTATCGGTGCCAT

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MKVSADTPGHDDPGPGRRLGLDVGTVRIGVAASDRDAKLAMPVETVPRETGFKGPDLADIDRLVAIVEEYNAVEVIVGLP
TDLQGNGSASVKHAKEIAFRVRRRLTNAGKNIPVRLGDERLTTVVATQALRASGVSEKAGRKVIDQAAAVEILQTWLDAR
TRALEPQTTDTQDFDEKGNFPG

Sequences:

>Translated_182_residues
MKVSADTPGHDDPGPGRRLGLDVGTVRIGVAASDRDAKLAMPVETVPRETGFKGPDLADIDRLVAIVEEYNAVEVIVGLP
TDLQGNGSASVKHAKEIAFRVRRRLTNAGKNIPVRLGDERLTTVVATQALRASGVSEKAGRKVIDQAAAVEILQTWLDAR
TRALEPQTTDTQDFDEKGNFPG
>Mature_182_residues
MKVSADTPGHDDPGPGRRLGLDVGTVRIGVAASDRDAKLAMPVETVPRETGFKGPDLADIDRLVAIVEEYNAVEVIVGLP
TDLQGNGSASVKHAKEIAFRVRRRLTNAGKNIPVRLGDERLTTVVATQALRASGVSEKAGRKVIDQAAAVEILQTWLDAR
TRALEPQTTDTQDFDEKGNFPG

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

Organism=Escherichia coli, GI1789318, Length=143, Percent_Identity=32.8671328671329, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 19491; Mature: 19491

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVSADTPGHDDPGPGRRLGLDVGTVRIGVAASDRDAKLAMPVETVPRETGFKGPDLADI
CCCCCCCCCCCCCCCCCEECCEECEEEEEEEECCCCCEEECCHHHCCHHCCCCCCCHHHH
DRLVAIVEEYNAVEVIVGLPTDLQGNGSASVKHAKEIAFRVRRRLTNAGKNIPVRLGDER
HHHHHHHHHCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCHH
LTTVVATQALRASGVSEKAGRKVIDQAAAVEILQTWLDARTRALEPQTTDTQDFDEKGNF
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
PG
CC
>Mature Secondary Structure
MKVSADTPGHDDPGPGRRLGLDVGTVRIGVAASDRDAKLAMPVETVPRETGFKGPDLADI
CCCCCCCCCCCCCCCCCEECCEECEEEEEEEECCCCCEEECCHHHCCHHCCCCCCCHHHH
DRLVAIVEEYNAVEVIVGLPTDLQGNGSASVKHAKEIAFRVRRRLTNAGKNIPVRLGDER
HHHHHHHHHCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCHH
LTTVVATQALRASGVSEKAGRKVIDQAAAVEILQTWLDARTRALEPQTTDTQDFDEKGNF
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
PG
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12948626 [H]