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The map label for this gene is araQ [H]

Identifier: 145295519

GI number: 145295519

Start: 1597768

End: 1598604

Strand: Direct

Name: araQ [H]

Synonym: cgR_1447

Alternate gene names: 145295519

Gene position: 1597768-1598604 (Clockwise)

Preceding gene: 145295518

Following gene: 145295520

Centisome position: 48.21

GC content: 48.51

Gene sequence:

>837_bases
ATGATCTCGACTGATAAAAACGTTTTGGTCAAAATCATGGGCTATGTCGGCATGGTTCTTGCCATCTTGTTCATTGGCCT
TCCGCTGGTATTTATTGTGCTGACTAGCTTCAAGCAGCAGTCAGAGATTTACACCCAGCCGGTCACGTGGTTCCCTTCGG
AATTTAATTTCGATAACTATGCAAATGTTTTCGAGCGGGTTCCGTTCCTGAACTACTTCCGCAACTCGATCATCATCACG
GTTATTTTGTGTCTGGTGAAGATTATCTTGGGTGTGATCTCTGCATATGCGTTGTCGATTTTGCGCTTCCCGGGTCGAAA
CCTTGTGTTCTTGCTGGTTATCTCCGCGCTGATGGTGCCTTCCGAAGTGACTGTTATTTCCAACTATGCGTTGGTCAGTC
AGCTTGGTTGGCGCGATACCTACCAGGGCATCATCGTTCCGCTAGCGGGTATTGCTTTCGGAACGTTCCTCATGCGTAAC
CACTTCATGTCTATTCCTTCTGAGCTCATTGAAGCTGCGCGAATGGATCACTGTGGACACTTCAGGTTGCTCTGGAAGGT
TTTGCTTCCAATCTCTATGCCTACGTTGGTGGCATTCTCCATGATCACCGTGGTGAATGAATGGAACCAATACCTGTGGC
CTTTCCTGATGGCAGAAACCGATAATTCAGCAACTCTGCCCATTGGTTTGACCATGCTTCAAAACAATGAGGGTGTCTCC
AACTGGGGACCTGTCATGGCCGCAACGATCATGACCATGTTGCCTGTGCTTGTGATGTTCTTGGCACTGCAGCAGTACAT
GATCAAGGGACTTATCTCCGGCGCCGTCAAGGGCTAA

Upstream 100 bases:

>100_bases
GCGCGGGATATGGTGCAACAATCGCAACGATTTTGTTCCTGTTGCTGCTGATTATCACTGTTATCCAGGTTCGATACATG
GATAAGGAGAACAAGCAGAA

Downstream 100 bases:

>100_bases
AAACTTCTCGCTAAAGGCTTCTCCTAGAAGCTTCTCCATGGGTTAACACAACCCATATCCCTCCCACTACATATATAAGG
ACTGAAAATGGCTCAGATTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MISTDKNVLVKIMGYVGMVLAILFIGLPLVFIVLTSFKQQSEIYTQPVTWFPSEFNFDNYANVFERVPFLNYFRNSIIIT
VILCLVKIILGVISAYALSILRFPGRNLVFLLVISALMVPSEVTVISNYALVSQLGWRDTYQGIIVPLAGIAFGTFLMRN
HFMSIPSELIEAARMDHCGHFRLLWKVLLPISMPTLVAFSMITVVNEWNQYLWPFLMAETDNSATLPIGLTMLQNNEGVS
NWGPVMAATIMTMLPVLVMFLALQQYMIKGLISGAVKG

Sequences:

>Translated_278_residues
MISTDKNVLVKIMGYVGMVLAILFIGLPLVFIVLTSFKQQSEIYTQPVTWFPSEFNFDNYANVFERVPFLNYFRNSIIIT
VILCLVKIILGVISAYALSILRFPGRNLVFLLVISALMVPSEVTVISNYALVSQLGWRDTYQGIIVPLAGIAFGTFLMRN
HFMSIPSELIEAARMDHCGHFRLLWKVLLPISMPTLVAFSMITVVNEWNQYLWPFLMAETDNSATLPIGLTMLQNNEGVS
NWGPVMAATIMTMLPVLVMFLALQQYMIKGLISGAVKG
>Mature_278_residues
MISTDKNVLVKIMGYVGMVLAILFIGLPLVFIVLTSFKQQSEIYTQPVTWFPSEFNFDNYANVFERVPFLNYFRNSIIIT
VILCLVKIILGVISAYALSILRFPGRNLVFLLVISALMVPSEVTVISNYALVSQLGWRDTYQGIIVPLAGIAFGTFLMRN
HFMSIPSELIEAARMDHCGHFRLLWKVLLPISMPTLVAFSMITVVNEWNQYLWPFLMAETDNSATLPIGLTMLQNNEGVS
NWGPVMAATIMTMLPVLVMFLALQQYMIKGLISGAVKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=272, Percent_Identity=31.6176470588235, Blast_Score=154, Evalue=6e-39,
Organism=Escherichia coli, GI1787571, Length=281, Percent_Identity=30.2491103202847, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1790464, Length=218, Percent_Identity=29.8165137614679, Blast_Score=94, Evalue=7e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31189; Mature: 31189

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]