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The map label for this gene is rbsD

Identifier: 145295394

GI number: 145295394

Start: 1463738

End: 1464109

Strand: Direct

Name: rbsD

Synonym: cgR_1332

Alternate gene names: 145295394

Gene position: 1463738-1464109 (Clockwise)

Preceding gene: 145295393

Following gene: 145295395

Centisome position: 44.17

GC content: 52.15

Gene sequence:

>372_bases
ATGAAAAAGTCCGGTTTACTAAACCCCGATCTGTGTTACGCCATCGCGCGGCTCGGGCACACCGATACCTGGGCAGTGGC
AGATTGCGGATTACCCATCCCAGAACACGTAGAGATCATTGATTTGGCACTCGTGTTTGGGATCCCCACCTTTGAACAAG
TACTGAATGCTCTCAAGCCGGAAGTAGTTGTGGAAGGCGCGGTGATTGCCGAAGGGACACCCGAACGTATCCGCGAAATG
GTGGATACGGATGTGGAAGTTGTCACGCATGAAGAGCTGAAAGCCCAGCTCGCGGAATGTGCCTTTGTCATTCGAACAGG
GGAGACCACTGCGTATGCGAATGTGATCTTCAAATCAGGCGTAGCTTTCTAA

Upstream 100 bases:

>100_bases
AGCAGCTAAGCTCCTGCGCGGTGAGGACGCTGAAACAGAGGTACCAGTTGAGGTTGTCATTGTGAAGCTCGACAACGTCG
CGGACTTCAAGTAGTCGGCG

Downstream 100 bases:

>100_bases
GAAAGTGTCGTTTTTTGTGCACCTGTTTTGTGGCGCCCCAAGCGCTGCAAAACGGGTGCATTTTGACGTCGAAAAGCAAT
GAATTTAATGCTCTTAAGCT

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 123

Protein sequence:

>123_residues
MKKSGLLNPDLCYAIARLGHTDTWAVADCGLPIPEHVEIIDLALVFGIPTFEQVLNALKPEVVVEGAVIAEGTPERIREM
VDTDVEVVTHEELKAQLAECAFVIRTGETTAYANVIFKSGVAF

Sequences:

>Translated_123_residues
MKKSGLLNPDLCYAIARLGHTDTWAVADCGLPIPEHVEIIDLALVFGIPTFEQVLNALKPEVVVEGAVIAEGTPERIREM
VDTDVEVVTHEELKAQLAECAFVIRTGETTAYANVIFKSGVAF
>Mature_123_residues
MKKSGLLNPDLCYAIARLGHTDTWAVADCGLPIPEHVEIIDLALVFGIPTFEQVLNALKPEVVVEGAVIAEGTPERIREM
VDTDVEVVTHEELKAQLAECAFVIRTGETTAYANVIFKSGVAF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=41.726618705036, Blast_Score=108, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSD_CORGB (A4QDL6)

Other databases:

- EMBL:   AP009044
- RefSeq:   YP_001138215.1
- ProteinModelPortal:   A4QDL6
- SMR:   A4QDL6
- STRING:   A4QDL6
- GeneID:   4993912
- GenomeReviews:   AP009044_GR
- KEGG:   cgt:cgR_1332
- eggNOG:   COG1869
- HOGENOM:   HBG510403
- OMA:   RAVIRTG
- ProtClustDB:   PRK11797
- GO:   GO:0005737
- HAMAP:   MF_01661
- InterPro:   IPR023064
- InterPro:   IPR007721

Pfam domain/function: PF05025 RbsD_FucU; SSF102546 RbsD_FucU

EC number: NA

Molecular weight: Translated: 13352; Mature: 13352

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: NA

Important sites: ACT_SITE 20-20 BINDING 28-28 BINDING 90-90

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSGLLNPDLCYAIARLGHTDTWAVADCGLPIPEHVEIIDLALVFGIPTFEQVLNALKP
CCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCC
EVVVEGAVIAEGTPERIREMVDTDVEVVTHEELKAQLAECAFVIRTGETTAYANVIFKSG
CEEECCEEEECCCHHHHHHHHCCCHHEEHHHHHHHHHHHHHHEEECCCCHHHHHHHHHCC
VAF
CCC
>Mature Secondary Structure
MKKSGLLNPDLCYAIARLGHTDTWAVADCGLPIPEHVEIIDLALVFGIPTFEQVLNALKP
CCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCC
EVVVEGAVIAEGTPERIREMVDTDVEVVTHEELKAQLAECAFVIRTGETTAYANVIFKSG
CEEECCEEEECCCHHHHHHHHCCCHHEEHHHHHHHHHHHHHHEEECCCCHHHHHHHHHCC
VAF
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA