| Definition | Corynebacterium glutamicum R chromosome, complete genome. |
|---|---|
| Accession | NC_009342 |
| Length | 3,314,179 |
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The map label for this gene is argS [H]
Identifier: 145295319
GI number: 145295319
Start: 1380919
End: 1382571
Strand: Direct
Name: argS [H]
Synonym: cgR_1259
Alternate gene names: 145295319
Gene position: 1380919-1382571 (Clockwise)
Preceding gene: 145295317
Following gene: 145295320
Centisome position: 41.67
GC content: 57.17
Gene sequence:
>1653_bases ATGACACCAGCTGATCTCGCAACATTGATTAAAGAGACCGCGGTAGAGGTTTTGACCTCCCGCGAGCTCGATACTTCTGT TCTTCCGGAGCAGGTAGTTGTGGAGCGTCCGCGTAACCCAGAGCACGGCGATTACGCCACCAACATTGCATTGCAGGTGG CTAAAAAGGTCGGTCAGAACCCTCGGGATTTGGCTACCTGGCTGGCAGAGGCATTGGCTGCAGATGACGCCATTGATTCT GCTGAAATCGCTGGCCCAGGCTTTTTGAACATTCGCCTTGCTGCAGCAGCACAGGGTGAAATTGTGGCCAAGATTCTGGC ACAGGGCGAGACTTTCGGAAACTCCGATCACCTTTCCCACTTGGACGTGAACCTCGAGTTCGTTTCTGCAAACCCAACCG GACCTATCCACCTTGGCGGAACCCGCTGGGCTGCCGTGGGTGACTCTTTGGGTCGTGTGCTGGAGGCTTCCGGCGCGAAA GTGACCCGCGAATACTACTTCAACGATCACGGCCGCCAGATCGATCGTTTCGCTTTGTCCCTTCTTGCAGCGGCGAAGGG CGAGCCAACGCCAGAAGACGGTTATGGCGGCGAATACATTAAGGAAATTGCGGAGGCAATCGTCGAAAAGCATCCTGAAG CGTTGGCTTTGGAGCCTGCCGCAACCCAGGAGCTTTTCCGCGCTGAAGGCGTGGAGATGATGTTCGAGCACATCAAATCT TCCCTGCATGAGTTCGGCACCGATTTCGATGTCTACTACCACGAGAACTCCCTGTTCGAGTCCGGTGCGGTGGATAAGGC CGTGCAGGTGCTGAAGGACAACGGCAACCTGTACGAAAACGAGGGCGCTTGGTGGCTGCGTTCCACCGAATTCGGCGATG ACAAAGACCGCGTGGTGATCAAGTCTGACGGCGACGCAGCCTACATCGCTGGCGATATCGCGTACGTGGCTGATAAGTTC TCCCGAGGACACAACCTCAACATCTACATGCTGGGTGCTGACCACCATGGTTACATCGCGCGCCTGAAGGCAGCGGCGGC GGCACTTGGCTACAAGCCAGAAGGCGTTGAAGTCCTGATTGGCCAGATGGTGAACCTGCTTCGCGACGGCAAGGCAGTGC GTATGTCCAAGCGTGCAGGCACCGTGGTCACCCTAGATGACCTCGTTGAAGCAATCGGCATCGATGCGGCGCGTTACTCC CTGATCCGTTCCTCCGTGGATTCCTCCCTGGATATTGATCTCGGCCTGTGGGAATCTCAGTCCTCCGACAACCCTGTGTA CTACGTGCAGTACGGACACGCTCGCCTTTGCTCCATCGCGCGCAAGGCAGAGACCTTGGGTGTCACCGAGGAAGGCGCAG ACCTATCTCTACTGACCCACGACCGCGAAGGCGATCTCATCCGCACACTCGGAGAGTTCCCAGCAGTGGTGAAGGCTGCC GCTGACCTACGTGAACCACACCGCATTGCCCGCTATGCTGAGGAATTAGCTGGAACTTTCCACCGCTTCTACGATTCCTG CCACATCCTTCCAAAGGCTGATGAGGATACGGCACCAATCCACTCAGCACGTCTGGCACTTGCAGCAGCAACCCGCCAGA CCCTCGCTAACGCCCTGCACCTGGTTGGCGTTTCCGCACCGGAGAAGATGTAA
Upstream 100 bases:
>100_bases TATACAGAGACCAATGATTTTTCATTAAAAAGGCAGGGATTTGTTATAAGTATGGGTCGTATTCTGTGCGACGGGTGTAC CTCGGCTAGAATTTCTCCCC
Downstream 100 bases:
>100_bases CAATGGCTACAGTTGAAAATTTCAATGAACTTCCCGCACACGTGTGGCCCCGCAATGCCGTGCGCCAAGAAGACGGCGTT GTCACCGTTGCTGGTGTGCC
Product: arginyl-tRNA synthetase
Products: NA
Alternate protein names: Arginine--tRNA ligase; ArgRS [H]
Number of amino acids: Translated: 550; Mature: 549
Protein sequence:
>550_residues MTPADLATLIKETAVEVLTSRELDTSVLPEQVVVERPRNPEHGDYATNIALQVAKKVGQNPRDLATWLAEALAADDAIDS AEIAGPGFLNIRLAAAAQGEIVAKILAQGETFGNSDHLSHLDVNLEFVSANPTGPIHLGGTRWAAVGDSLGRVLEASGAK VTREYYFNDHGRQIDRFALSLLAAAKGEPTPEDGYGGEYIKEIAEAIVEKHPEALALEPAATQELFRAEGVEMMFEHIKS SLHEFGTDFDVYYHENSLFESGAVDKAVQVLKDNGNLYENEGAWWLRSTEFGDDKDRVVIKSDGDAAYIAGDIAYVADKF SRGHNLNIYMLGADHHGYIARLKAAAAALGYKPEGVEVLIGQMVNLLRDGKAVRMSKRAGTVVTLDDLVEAIGIDAARYS LIRSSVDSSLDIDLGLWESQSSDNPVYYVQYGHARLCSIARKAETLGVTEEGADLSLLTHDREGDLIRTLGEFPAVVKAA ADLREPHRIARYAEELAGTFHRFYDSCHILPKADEDTAPIHSARLALAAATRQTLANALHLVGVSAPEKM
Sequences:
>Translated_550_residues MTPADLATLIKETAVEVLTSRELDTSVLPEQVVVERPRNPEHGDYATNIALQVAKKVGQNPRDLATWLAEALAADDAIDS AEIAGPGFLNIRLAAAAQGEIVAKILAQGETFGNSDHLSHLDVNLEFVSANPTGPIHLGGTRWAAVGDSLGRVLEASGAK VTREYYFNDHGRQIDRFALSLLAAAKGEPTPEDGYGGEYIKEIAEAIVEKHPEALALEPAATQELFRAEGVEMMFEHIKS SLHEFGTDFDVYYHENSLFESGAVDKAVQVLKDNGNLYENEGAWWLRSTEFGDDKDRVVIKSDGDAAYIAGDIAYVADKF SRGHNLNIYMLGADHHGYIARLKAAAAALGYKPEGVEVLIGQMVNLLRDGKAVRMSKRAGTVVTLDDLVEAIGIDAARYS LIRSSVDSSLDIDLGLWESQSSDNPVYYVQYGHARLCSIARKAETLGVTEEGADLSLLTHDREGDLIRTLGEFPAVVKAA ADLREPHRIARYAEELAGTFHRFYDSCHILPKADEDTAPIHSARLALAAATRQTLANALHLVGVSAPEKM >Mature_549_residues TPADLATLIKETAVEVLTSRELDTSVLPEQVVVERPRNPEHGDYATNIALQVAKKVGQNPRDLATWLAEALAADDAIDSA EIAGPGFLNIRLAAAAQGEIVAKILAQGETFGNSDHLSHLDVNLEFVSANPTGPIHLGGTRWAAVGDSLGRVLEASGAKV TREYYFNDHGRQIDRFALSLLAAAKGEPTPEDGYGGEYIKEIAEAIVEKHPEALALEPAATQELFRAEGVEMMFEHIKSS LHEFGTDFDVYYHENSLFESGAVDKAVQVLKDNGNLYENEGAWWLRSTEFGDDKDRVVIKSDGDAAYIAGDIAYVADKFS RGHNLNIYMLGADHHGYIARLKAAAAALGYKPEGVEVLIGQMVNLLRDGKAVRMSKRAGTVVTLDDLVEAIGIDAARYSL IRSSVDSSLDIDLGLWESQSSDNPVYYVQYGHARLCSIARKAETLGVTEEGADLSLLTHDREGDLIRTLGEFPAVVKAAA DLREPHRIARYAEELAGTFHRFYDSCHILPKADEDTAPIHSARLALAAATRQTLANALHLVGVSAPEKM
Specific function: Unknown
COG id: COG0018
COG function: function code J; Arginyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Escherichia coli, GI1788184, Length=568, Percent_Identity=26.7605633802817, Blast_Score=132, Evalue=8e-32, Organism=Saccharomyces cerevisiae, GI6320548, Length=552, Percent_Identity=26.4492753623188, Blast_Score=144, Evalue=3e-35, Organism=Saccharomyces cerevisiae, GI6321883, Length=548, Percent_Identity=23.3576642335766, Blast_Score=99, Evalue=2e-21,
Paralogues:
None
Copy number: 789 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001412 - InterPro: IPR001278 - InterPro: IPR015945 - InterPro: IPR005148 - InterPro: IPR008909 - InterPro: IPR014729 - InterPro: IPR009080 [H]
Pfam domain/function: PF03485 Arg_tRNA_synt_N; PF05746 DALR_1; PF00750 tRNA-synt_1d [H]
EC number: =6.1.1.19 [H]
Molecular weight: Translated: 59681; Mature: 59550
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPADLATLIKETAVEVLTSRELDTSVLPEQVVVERPRNPEHGDYATNIALQVAKKVGQN CCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCC PRDLATWLAEALAADDAIDSAEIAGPGFLNIRLAAAAQGEIVAKILAQGETFGNSDHLSH HHHHHHHHHHHHHHCCCCCCHHCCCCCEEEEEEEECCCHHHHHHHHHCCCCCCCCCCCEE LDVNLEFVSANPTGPIHLGGTRWAAVGDSLGRVLEASGAKVTREYYFNDHGRQIDRFALS EEEEEEEEECCCCCCEEECCCHHHHHHHHHHHHHHCCCCEEEHHHEECCCCCHHHHHHHH LLAAAKGEPTPEDGYGGEYIKEIAEAIVEKHPEALALEPAATQELFRAEGVEMMFEHIKS HHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHCCHHHHHHHHHH SLHEFGTDFDVYYHENSLFESGAVDKAVQVLKDNGNLYENEGAWWLRSTEFGDDKDRVVI HHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEECCCCEEEEECCCCCCCCEEEE KSDGDAAYIAGDIAYVADKFSRGHNLNIYMLGADHHGYIARLKAAAAALGYKPEGVEVLI ECCCCEEEEEHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHH GQMVNLLRDGKAVRMSKRAGTVVTLDDLVEAIGIDAARYSLIRSSVDSSLDIDLGLWESQ HHHHHHHHCCCCEEECCCCCCEEEHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEECCCC SSDNPVYYVQYGHARLCSIARKAETLGVTEEGADLSLLTHDREGDLIRTLGEFPAVVKAA CCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH ADLREPHRIARYAEELAGTFHRFYDSCHILPKADEDTAPIHSARLALAAATRQTLANALH HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH LVGVSAPEKM HHCCCCCCCC >Mature Secondary Structure TPADLATLIKETAVEVLTSRELDTSVLPEQVVVERPRNPEHGDYATNIALQVAKKVGQN CHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCC PRDLATWLAEALAADDAIDSAEIAGPGFLNIRLAAAAQGEIVAKILAQGETFGNSDHLSH HHHHHHHHHHHHHHCCCCCCHHCCCCCEEEEEEEECCCHHHHHHHHHCCCCCCCCCCCEE LDVNLEFVSANPTGPIHLGGTRWAAVGDSLGRVLEASGAKVTREYYFNDHGRQIDRFALS EEEEEEEEECCCCCCEEECCCHHHHHHHHHHHHHHCCCCEEEHHHEECCCCCHHHHHHHH LLAAAKGEPTPEDGYGGEYIKEIAEAIVEKHPEALALEPAATQELFRAEGVEMMFEHIKS HHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHCCHHHHHHHHHH SLHEFGTDFDVYYHENSLFESGAVDKAVQVLKDNGNLYENEGAWWLRSTEFGDDKDRVVI HHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEECCCCEEEEECCCCCCCCEEEE KSDGDAAYIAGDIAYVADKFSRGHNLNIYMLGADHHGYIARLKAAAAALGYKPEGVEVLI ECCCCEEEEEHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHH GQMVNLLRDGKAVRMSKRAGTVVTLDDLVEAIGIDAARYSLIRSSVDSSLDIDLGLWESQ HHHHHHHHCCCCEEECCCCCCEEEHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEECCCC SSDNPVYYVQYGHARLCSIARKAETLGVTEEGADLSLLTHDREGDLIRTLGEFPAVVKAA CCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH ADLREPHRIARYAEELAGTFHRFYDSCHILPKADEDTAPIHSARLALAAATRQTLANALH HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH LVGVSAPEKM HHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12840036 [H]