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The map label for this gene is atoE [H]

Identifier: 145295310

GI number: 145295310

Start: 1370675

End: 1372378

Strand: Direct

Name: atoE [H]

Synonym: cgR_1250

Alternate gene names: 145295310

Gene position: 1370675-1372378 (Clockwise)

Preceding gene: 145295309

Following gene: 145295311

Centisome position: 41.36

GC content: 52.64

Gene sequence:

>1704_bases
GTGCGCGATATCGCCGTCGCTTCAGGCGCCCTGTGTATCAGTGTAGATTATCGCCGTGCACCGGAACATCCTTTTCCCGC
TGCATTGGATGATTGCCAAGTAGTCACGGAAGCTGTCCTCAATGGTGAACTCGCCAGTGCTAACCAGCAGCTAGTGACAG
TCGGCGGGGACAGCGCCGGTGGCAATATTGCGGCGGTCATCGCTCAACAGCTGCGCGATCAGATCACCCACCAAGTTCTT
GTGTATCCGGTGATGGACGTAATCTTGCTGGTGATTTGTTCTATCATTACCACTGGTTTTGCGCTGCTCATGCATCCAAA
GAGCAAGGACAAGACGGAGACGATTTCTGATGAATTCCTCGCAGAGATCCAAGCGGGAAGTGAAAAGATCTCCATTCCGC
GTTCGACCCCTGCTGAAAAAGCCAATGCGAGCCGCTGGATCATGTACTTCGTTGGCGGAATTGGCCTGCTCTACAGCGTG
TTCAGCCTGTGGACAGGTGGCGTAACCGGACTGACGTTGAACTCCTTCAACTTCCTGTTCCTGTCACTCGGCATGGTGCT
CACCGCTAATTACGGGCCAGAATATTACGCAAAGCTTATTCGCGAAGGCATCCAAGGAACGTGGGGTTTCATTCTCCACT
TCCCGTTCTACGCAGGCATTTTCGGCCTAATTTCCTTCACCCGATTGGGTGTTGTGATCTCCGGATTTTTCACCTTGATT
TCCACGGCAACCACGTGGCCTGTCATCGCGCTCCTCTACTCTGGACTGCTCAACATCGCGGTACCTTCAGGTGGCTCGAA
ATTCATCATCGAAGCCCCGTACATCATCCCAACCACAGTGGATCTTGGCGCCGATATGGGCCTTGTCCTGCAGGCTTATC
AAATGAGTGATGGCGCGACCAACCTGCCCATTCCGTTCTTCGCGCTGCCATATTTGGCCAATTTCAAGATCAAATTCAGC
CAAGTGGTGGGCTATACAGTTCCGCCTGTCCTCGTTGTTATCGCCGTGACCTGCATTTACCTGTTCCTGCGAGCATCAAT
GATTTACAAAGATGCTTCTCGACGCCAAAAGCCGCGGCACCTTCAGCAATTACTGAAGGTACAGCGGCTTTTTGTTTGTG
GGCGCTTAAGCAGCCTTGATTGCGGAGCCGTCGATCTCGATCTTGATCTTCTCAGAAACCAGAACGCCACCGGTGGAGAG
TGGAGCCTGGAAATCTACGCCGAAGTCCTTGCGGTTGATTTCGGTGGAGGCTTCGAAGCCAAGGCGGGTGTTGCCGAATG
GATCCTCAGCAACGCCACCAACCTCAACGTCCAGGGTGACGGACTTGGTGGTGTCACGAATTGTGAGGTCGCCGGTAACG
GTGCCTTCGTTTTCGTTCTTGATAACAAAGGAAGTAGCTTCGAAAGTCATTTCAGGGAACTTGTCTACTGCGAAGAAGTC
GTCGCCCTTAACGTGTGCATCGCGGTCTGCGTTGCCGGTGGTAACGGAAGCGGTTTTGATAACAACCTTTGCAGAGGAGT
TCTCTGGGTTTTCAGCATCTACGACAATGGAGTCGGTGTACTCGGTGAATTCACCGCGAACCTTGGTAACCATTGCGTGG
CGAGCCACGAACTTGATTTCGGTGTGTGCAGGGTCGAGGGTCCAGGTGCCAGTCAACTTGCTCATTGTGAAGTCCTTTTC
GGTGAAAGTGTGTTTCGTTTTTAA

Upstream 100 bases:

>100_bases
TCCGCACCCCAACGACGGGCCGCTTCCTGTCTTTATCTACTTCCATGGTGGCGGATGGGTTTTGGGGGGACCTTGAATCA
GTGGATTCCACCGTGCCACC

Downstream 100 bases:

>100_bases
CGGTATCGACACTCTTGCATCTGCGCAGTCTGTGTCGCGGCCGTTGTTCGTGTTCTATACTAGCCAAGATTGATGATGTG
TCAACAATATTTCTAAAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 567; Mature: 567

Protein sequence:

>567_residues
MRDIAVASGALCISVDYRRAPEHPFPAALDDCQVVTEAVLNGELASANQQLVTVGGDSAGGNIAAVIAQQLRDQITHQVL
VYPVMDVILLVICSIITTGFALLMHPKSKDKTETISDEFLAEIQAGSEKISIPRSTPAEKANASRWIMYFVGGIGLLYSV
FSLWTGGVTGLTLNSFNFLFLSLGMVLTANYGPEYYAKLIREGIQGTWGFILHFPFYAGIFGLISFTRLGVVISGFFTLI
STATTWPVIALLYSGLLNIAVPSGGSKFIIEAPYIIPTTVDLGADMGLVLQAYQMSDGATNLPIPFFALPYLANFKIKFS
QVVGYTVPPVLVVIAVTCIYLFLRASMIYKDASRRQKPRHLQQLLKVQRLFVCGRLSSLDCGAVDLDLDLLRNQNATGGE
WSLEIYAEVLAVDFGGGFEAKAGVAEWILSNATNLNVQGDGLGGVTNCEVAGNGAFVFVLDNKGSSFESHFRELVYCEEV
VALNVCIAVCVAGGNGSGFDNNLCRGVLWVFSIYDNGVGVLGEFTANLGNHCVASHELDFGVCRVEGPGASQLAHCEVLF
GESVFRF

Sequences:

>Translated_567_residues
MRDIAVASGALCISVDYRRAPEHPFPAALDDCQVVTEAVLNGELASANQQLVTVGGDSAGGNIAAVIAQQLRDQITHQVL
VYPVMDVILLVICSIITTGFALLMHPKSKDKTETISDEFLAEIQAGSEKISIPRSTPAEKANASRWIMYFVGGIGLLYSV
FSLWTGGVTGLTLNSFNFLFLSLGMVLTANYGPEYYAKLIREGIQGTWGFILHFPFYAGIFGLISFTRLGVVISGFFTLI
STATTWPVIALLYSGLLNIAVPSGGSKFIIEAPYIIPTTVDLGADMGLVLQAYQMSDGATNLPIPFFALPYLANFKIKFS
QVVGYTVPPVLVVIAVTCIYLFLRASMIYKDASRRQKPRHLQQLLKVQRLFVCGRLSSLDCGAVDLDLDLLRNQNATGGE
WSLEIYAEVLAVDFGGGFEAKAGVAEWILSNATNLNVQGDGLGGVTNCEVAGNGAFVFVLDNKGSSFESHFRELVYCEEV
VALNVCIAVCVAGGNGSGFDNNLCRGVLWVFSIYDNGVGVLGEFTANLGNHCVASHELDFGVCRVEGPGASQLAHCEVLF
GESVFRF
>Mature_567_residues
MRDIAVASGALCISVDYRRAPEHPFPAALDDCQVVTEAVLNGELASANQQLVTVGGDSAGGNIAAVIAQQLRDQITHQVL
VYPVMDVILLVICSIITTGFALLMHPKSKDKTETISDEFLAEIQAGSEKISIPRSTPAEKANASRWIMYFVGGIGLLYSV
FSLWTGGVTGLTLNSFNFLFLSLGMVLTANYGPEYYAKLIREGIQGTWGFILHFPFYAGIFGLISFTRLGVVISGFFTLI
STATTWPVIALLYSGLLNIAVPSGGSKFIIEAPYIIPTTVDLGADMGLVLQAYQMSDGATNLPIPFFALPYLANFKIKFS
QVVGYTVPPVLVVIAVTCIYLFLRASMIYKDASRRQKPRHLQQLLKVQRLFVCGRLSSLDCGAVDLDLDLLRNQNATGGE
WSLEIYAEVLAVDFGGGFEAKAGVAEWILSNATNLNVQGDGLGGVTNCEVAGNGAFVFVLDNKGSSFESHFRELVYCEEV
VALNVCIAVCVAGGNGSGFDNNLCRGVLWVFSIYDNGVGVLGEFTANLGNHCVASHELDFGVCRVEGPGASQLAHCEVLF
GESVFRF

Specific function: Responsible for the intake of short-chain fatty acids [H]

COG id: COG2031

COG function: function code I; Short chain fatty acids transporter

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788553, Length=260, Percent_Identity=31.9230769230769, Blast_Score=117, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17567059, Length=81, Percent_Identity=54.320987654321, Blast_Score=83, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006161
- InterPro:   IPR006160 [H]

Pfam domain/function: PF02667 SCFA_trans [H]

EC number: NA

Molecular weight: Translated: 61000; Mature: 61000

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDIAVASGALCISVDYRRAPEHPFPAALDDCQVVTEAVLNGELASANQQLVTVGGDSAG
CCCCEEECCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCC
GNIAAVIAQQLRDQITHQVLVYPVMDVILLVICSIITTGFALLMHPKSKDKTETISDEFL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHH
AEIQAGSEKISIPRSTPAEKANASRWIMYFVGGIGLLYSVFSLWTGGVTGLTLNSFNFLF
HHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHH
LSLGMVLTANYGPEYYAKLIREGIQGTWGFILHFPFYAGIFGLISFTRLGVVISGFFTLI
HHHHHHHEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
STATTWPVIALLYSGLLNIAVPSGGSKFIIEAPYIIPTTVDLGADMGLVLQAYQMSDGAT
HHHHHHHHHHHHHHCHHEEEECCCCCEEEEECCEEEEEECCCCCCCHHHHEEEECCCCCC
NLPIPFFALPYLANFKIKFSQVVGYTVPPVLVVIAVTCIYLFLRASMIYKDASRRQKPRH
CCCCHHHHHHHHHCCEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
LQQLLKVQRLFVCGRLSSLDCGAVDLDLDLLRNQNATGGEWSLEIYAEVLAVDFGGGFEA
HHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHCCCCCCCCCHHHEEEEEHEEECCCCCCC
KAGVAEWILSNATNLNVQGDGLGGVTNCEVAGNGAFVFVLDNKGSSFESHFRELVYCEEV
CHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHH
VALNVCIAVCVAGGNGSGFDNNLCRGVLWVFSIYDNGVGVLGEFTANLGNHCVASHELDF
HHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEECCCCCC
GVCRVEGPGASQLAHCEVLFGESVFRF
EEEEECCCCCCCCEEEEEEECCHHHCC
>Mature Secondary Structure
MRDIAVASGALCISVDYRRAPEHPFPAALDDCQVVTEAVLNGELASANQQLVTVGGDSAG
CCCCEEECCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCC
GNIAAVIAQQLRDQITHQVLVYPVMDVILLVICSIITTGFALLMHPKSKDKTETISDEFL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHH
AEIQAGSEKISIPRSTPAEKANASRWIMYFVGGIGLLYSVFSLWTGGVTGLTLNSFNFLF
HHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHH
LSLGMVLTANYGPEYYAKLIREGIQGTWGFILHFPFYAGIFGLISFTRLGVVISGFFTLI
HHHHHHHEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
STATTWPVIALLYSGLLNIAVPSGGSKFIIEAPYIIPTTVDLGADMGLVLQAYQMSDGAT
HHHHHHHHHHHHHHCHHEEEECCCCCEEEEECCEEEEEECCCCCCCHHHHEEEECCCCCC
NLPIPFFALPYLANFKIKFSQVVGYTVPPVLVVIAVTCIYLFLRASMIYKDASRRQKPRH
CCCCHHHHHHHHHCCEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
LQQLLKVQRLFVCGRLSSLDCGAVDLDLDLLRNQNATGGEWSLEIYAEVLAVDFGGGFEA
HHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHCCCCCCCCCHHHEEEEEHEEECCCCCCC
KAGVAEWILSNATNLNVQGDGLGGVTNCEVAGNGAFVFVLDNKGSSFESHFRELVYCEEV
CHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHH
VALNVCIAVCVAGGNGSGFDNNLCRGVLWVFSIYDNGVGVLGEFTANLGNHCVASHELDF
HHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEECCCCCC
GVCRVEGPGASQLAHCEVLFGESVFRF
EEEEECCCCCCCCEEEEEEECCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]