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The map label for this gene is cydD [H]

Identifier: 145295291

GI number: 145295291

Start: 1342147

End: 1343565

Strand: Reverse

Name: cydD [H]

Synonym: cgR_1231

Alternate gene names: 145295291

Gene position: 1343565-1342147 (Counterclockwise)

Preceding gene: 145295292

Following gene: 145295290

Centisome position: 40.54

GC content: 59.34

Gene sequence:

>1419_bases
TTGAAAACCCTCGCGACAGTCGCAATGGGCTTGCTCATCGGACAGATGGCAGCGGGCATCATTGAGGTTTCGGGAAGTTC
CTTGCCCCGAATGGAACTCATCGCGCTCGCCATCACGGTGGTTGTGCGCGGACTTCTTGCGTGGGCACAGAACCGGTTCG
CGGAACGCGCATCGTCCCAGGTGACTGTGGATCTTCGGGAGAAAACCCTGCGGCACCTGGCACAAAGCGATCCCCGCACC
ATCGATCAAGCCTTGTGGCGCACCCGTTTGACCTCTGGCCTTGATGGTTTGGGGCCTTACCTCACCGGATTTTTGCCGGC
ACTGGCCGCCACGATCATTGCCACCCCGGTCATGCTCGCGGTGGTGGGTTGGCTGGATGTTGGGTCCATGGTCATCGCGA
TCATCACGCTCCCCCTCATTCCGGTGTTCATGTGGCTGGTGGGAACACTCACCGCAGGTCGCACCGAACAACGCCTCAGC
GACCTAGCCATTTTGGGAGGTCAGCTGCTTGATCTCATCGCAGGCTTGCCCACCTTGCGAGCATTCAGGCGCCACCAAGA
CATGGCAGCTCAGGTGACGCGACTATCCTCCCAACATGCAAGCTCCACGTTGAGCGTGCTGAAAATCGCGTTCCTTTCCA
GCTTTGTGTTGGAATTTTTGGCCACACTATCGGTCGCATTGGTAGCGGTTGGCATCGGATTTCGCCTGCTCGCGGGCGAT
CTCACCCTCGCCATCGGCCTGACCGTACTGATCATCATCCCAGAGGTCTACGCGCCGATCCGCGAAGTCGGTACCCGCTT
CCACGACGCCCAAGACGGCCTGGTTGCCACCGATGAGATCCTAAAATTCCTCAGCGTTTCTTCGCTTGTCGACGCGCCTA
CCCACACACCCCGCGACGTTGCAGGCGGGCTGGAGGTGAGCGTCGAAAAGCTTCGCGCTGATGGACGCGATGGGCCGAGG
CCTGCTGATTTGTCGTTCACCGCAAAGCCTGGGCAGTTGACGGTGCTGTGGGGGCCAAACGGCAGCGGCAAATCCACGGC
CTTGCTAGCGGTGTTGGGCTTGGCGACGGAAGGCATCACTGGAGAGGTTTCCGTCAAGGATGCCTCTGGCCAGGAATTTA
AGGACAGCACATTGTGGGAGCACTGCGCATATTTGCCACAGCGGCCGGTCATTGATCCGGAAAGTGTCAGTGATTATGCG
GAACTGTCGCTTGGGCAACGCCAACGGCTTGCGCTGAAACGTGAGATTGGGGCGCAATTGCTCCTGTTGGACGAGCCGAC
CGCGCACCTGGATCCAGACAACGCTGCAATCATGATCCAGCAATTGCAGGATGAAGCCCGCCGAGGCACCACAGTACTAG
CGGTTTCGCATGATCCGTTGCTGCGTGCGGCTGCCGATGAAGTGGTGGAGGTCAAATGA

Upstream 100 bases:

>100_bases
CGCTCCGGCTAGTCGCCGCACAGGCCCCGTCGATCCGCGGCTTTTGCGCCTATCCCCCGCTACCCGCCGTTGGGTGATAA
TCGCAGGTGTTCTCACCGCG

Downstream 100 bases:

>100_bases
ACACCCTGGTAAAACTTCGTTTCCGCGAGCTAATTCCCGCCGTTGTTGCAGGTAGCGTGACGATGATCGCCTCCATCACC
CTGACGGTGGTGTCGGCCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 472; Mature: 472

Protein sequence:

>472_residues
MKTLATVAMGLLIGQMAAGIIEVSGSSLPRMELIALAITVVVRGLLAWAQNRFAERASSQVTVDLREKTLRHLAQSDPRT
IDQALWRTRLTSGLDGLGPYLTGFLPALAATIIATPVMLAVVGWLDVGSMVIAIITLPLIPVFMWLVGTLTAGRTEQRLS
DLAILGGQLLDLIAGLPTLRAFRRHQDMAAQVTRLSSQHASSTLSVLKIAFLSSFVLEFLATLSVALVAVGIGFRLLAGD
LTLAIGLTVLIIIPEVYAPIREVGTRFHDAQDGLVATDEILKFLSVSSLVDAPTHTPRDVAGGLEVSVEKLRADGRDGPR
PADLSFTAKPGQLTVLWGPNGSGKSTALLAVLGLATEGITGEVSVKDASGQEFKDSTLWEHCAYLPQRPVIDPESVSDYA
ELSLGQRQRLALKREIGAQLLLLDEPTAHLDPDNAAIMIQQLQDEARRGTTVLAVSHDPLLRAAADEVVEVK

Sequences:

>Translated_472_residues
MKTLATVAMGLLIGQMAAGIIEVSGSSLPRMELIALAITVVVRGLLAWAQNRFAERASSQVTVDLREKTLRHLAQSDPRT
IDQALWRTRLTSGLDGLGPYLTGFLPALAATIIATPVMLAVVGWLDVGSMVIAIITLPLIPVFMWLVGTLTAGRTEQRLS
DLAILGGQLLDLIAGLPTLRAFRRHQDMAAQVTRLSSQHASSTLSVLKIAFLSSFVLEFLATLSVALVAVGIGFRLLAGD
LTLAIGLTVLIIIPEVYAPIREVGTRFHDAQDGLVATDEILKFLSVSSLVDAPTHTPRDVAGGLEVSVEKLRADGRDGPR
PADLSFTAKPGQLTVLWGPNGSGKSTALLAVLGLATEGITGEVSVKDASGQEFKDSTLWEHCAYLPQRPVIDPESVSDYA
ELSLGQRQRLALKREIGAQLLLLDEPTAHLDPDNAAIMIQQLQDEARRGTTVLAVSHDPLLRAAADEVVEVK
>Mature_472_residues
MKTLATVAMGLLIGQMAAGIIEVSGSSLPRMELIALAITVVVRGLLAWAQNRFAERASSQVTVDLREKTLRHLAQSDPRT
IDQALWRTRLTSGLDGLGPYLTGFLPALAATIIATPVMLAVVGWLDVGSMVIAIITLPLIPVFMWLVGTLTAGRTEQRLS
DLAILGGQLLDLIAGLPTLRAFRRHQDMAAQVTRLSSQHASSTLSVLKIAFLSSFVLEFLATLSVALVAVGIGFRLLAGD
LTLAIGLTVLIIIPEVYAPIREVGTRFHDAQDGLVATDEILKFLSVSSLVDAPTHTPRDVAGGLEVSVEKLRADGRDGPR
PADLSFTAKPGQLTVLWGPNGSGKSTALLAVLGLATEGITGEVSVKDASGQEFKDSTLWEHCAYLPQRPVIDPESVSDYA
ELSLGQRQRLALKREIGAQLLLLDEPTAHLDPDNAAIMIQQLQDEARRGTTVLAVSHDPLLRAAADEVVEVK

Specific function: Somehow involved in the cytochrome D branch of aerobic respiration. Seems to be a component of a transport system [H]

COG id: COG4988

COG function: function code CO; ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Escherichia coli, GI1787113, Length=483, Percent_Identity=30.4347826086957, Blast_Score=149, Evalue=3e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR017940
- InterPro:   IPR014216
- InterPro:   IPR001140
- InterPro:   IPR011527
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00664 ABC_membrane; PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 50416; Mature: 50416

Theoretical pI: Translated: 5.46; Mature: 5.46

Prosite motif: PS50929 ABC_TM1F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLATVAMGLLIGQMAAGIIEVSGSSLPRMELIALAITVVVRGLLAWAQNRFAERASSQ
CCHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
VTVDLREKTLRHLAQSDPRTIDQALWRTRLTSGLDGLGPYLTGFLPALAATIIATPVMLA
EEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VVGWLDVGSMVIAIITLPLIPVFMWLVGTLTAGRTEQRLSDLAILGGQLLDLIAGLPTLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHH
AFRRHQDMAAQVTRLSSQHASSTLSVLKIAFLSSFVLEFLATLSVALVAVGIGFRLLAGD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTLAIGLTVLIIIPEVYAPIREVGTRFHDAQDGLVATDEILKFLSVSSLVDAPTHTPRDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCHHH
AGGLEVSVEKLRADGRDGPRPADLSFTAKPGQLTVLWGPNGSGKSTALLAVLGLATEGIT
CCCHHHHHHHHHCCCCCCCCCCCCEEECCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCC
GEVSVKDASGQEFKDSTLWEHCAYLPQRPVIDPESVSDYAELSLGQRQRLALKREIGAQL
CEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCEE
LLLDEPTAHLDPDNAAIMIQQLQDEARRGTTVLAVSHDPLLRAAADEVVEVK
EEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MKTLATVAMGLLIGQMAAGIIEVSGSSLPRMELIALAITVVVRGLLAWAQNRFAERASSQ
CCHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
VTVDLREKTLRHLAQSDPRTIDQALWRTRLTSGLDGLGPYLTGFLPALAATIIATPVMLA
EEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VVGWLDVGSMVIAIITLPLIPVFMWLVGTLTAGRTEQRLSDLAILGGQLLDLIAGLPTLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHH
AFRRHQDMAAQVTRLSSQHASSTLSVLKIAFLSSFVLEFLATLSVALVAVGIGFRLLAGD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTLAIGLTVLIIIPEVYAPIREVGTRFHDAQDGLVATDEILKFLSVSSLVDAPTHTPRDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCHHH
AGGLEVSVEKLRADGRDGPRPADLSFTAKPGQLTVLWGPNGSGKSTALLAVLGLATEGIT
CCCHHHHHHHHHCCCCCCCCCCCCEEECCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCC
GEVSVKDASGQEFKDSTLWEHCAYLPQRPVIDPESVSDYAELSLGQRQRLALKREIGAQL
CEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCEE
LLLDEPTAHLDPDNAAIMIQQLQDEARRGTTVLAVSHDPLLRAAADEVVEVK
EEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]