| Definition | Corynebacterium glutamicum R chromosome, complete genome. |
|---|---|
| Accession | NC_009342 |
| Length | 3,314,179 |
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The map label for this gene is pdxK [H]
Identifier: 145295071
GI number: 145295071
Start: 1121887
End: 1122681
Strand: Direct
Name: pdxK [H]
Synonym: cgR_1014
Alternate gene names: 145295071
Gene position: 1121887-1122681 (Clockwise)
Preceding gene: 145295070
Following gene: 145295073
Centisome position: 33.85
GC content: 60.5
Gene sequence:
>795_bases ATGCCATCGGCAGGCGAGGAGATTTTAGAGCAGCGCGCGCAGCTGGAGTTTGATCAGCGTCGCGCCGATGTGGTGATGAT CGGCAGCCAGGTGGTTTATGGTTCCGTGGGGCTGAGCGCTGCCATTCCGGTGATGCATAATGAAGGCCTCCGCGTGGTCG CTGTCCCCACCGTGGTGTTAAGTTCCATGCCGCGTTATGCCAGTTCTCACCGCCAGCCGATGTCGGACCAATGGCTCGCC GACGCGCTGCAAGACCTGGTGGATCTGGGGATTATCGATGAGGTTTCCACCATTTCCACCGGCTATTTTACCTCTGCATC TCAGGTGCGCGTGGTCGCTGCGTGGCTGCAGAAAATCCGCGGAACCCACCCGCATGTACGCATCGTGGTGGATCCCATAA TGGGGGACAGTGACGTGGGAATTTATGTCGCCGACGAGATCGCAACCGCCATCTGCCAGGACTTATGCCCGTTGGCCACC GGAATCATTCCAAATGCTTTCGAGCTCTCCCACATGGTTGGCTCCGGCGATCCGCGCTCGCTGCTCGGCCCGTTTGGCGA GTGGATCATCGTCACCAGCGCCACTGAAACTGCGGGCACCACCGTCACCCGCATCGTCACGCGCGATAGCGTCCAGGAAA TCGCCTCCGCCACCGTCGATACCACGGCCAAAGGGGCAGGCGACGTCTACGCCGCAGCAGTAATCGCCGCATTGCATAAA GATTTTTCGCTTATCGACGCCGCCACCCACGCATCCAACACCGTCCGCGCCGGCCTGCAGACCAAAGCGCTCTAG
Upstream 100 bases:
>100_bases GCTCACCGAGCTGGACACCAAGCTCCGCGCAGTGCAGGAAGAACACGGCGAGCTGGAAATGCAGTGGCTGGAACTCGGCG AGGAAATCGAGGGCTAGTTC
Downstream 100 bases:
>100_bases GTTTCGTCCGTTTCTGACAGCAAACTACCGAGCAGCAATCCCAGCACGAAATCATCAACCTGCCCGAACTGCACCTGACG GATCCGTCCTTTTCGATCAG
Product: hypothetical protein
Products: NA
Alternate protein names: PN/PL/PM kinase; Pyridoxal kinase; Pyridoxamine kinase; Vitamin B6 kinase [H]
Number of amino acids: Translated: 264; Mature: 263
Protein sequence:
>264_residues MPSAGEEILEQRAQLEFDQRRADVVMIGSQVVYGSVGLSAAIPVMHNEGLRVVAVPTVVLSSMPRYASSHRQPMSDQWLA DALQDLVDLGIIDEVSTISTGYFTSASQVRVVAAWLQKIRGTHPHVRIVVDPIMGDSDVGIYVADEIATAICQDLCPLAT GIIPNAFELSHMVGSGDPRSLLGPFGEWIIVTSATETAGTTVTRIVTRDSVQEIASATVDTTAKGAGDVYAAAVIAALHK DFSLIDAATHASNTVRAGLQTKAL
Sequences:
>Translated_264_residues MPSAGEEILEQRAQLEFDQRRADVVMIGSQVVYGSVGLSAAIPVMHNEGLRVVAVPTVVLSSMPRYASSHRQPMSDQWLA DALQDLVDLGIIDEVSTISTGYFTSASQVRVVAAWLQKIRGTHPHVRIVVDPIMGDSDVGIYVADEIATAICQDLCPLAT GIIPNAFELSHMVGSGDPRSLLGPFGEWIIVTSATETAGTTVTRIVTRDSVQEIASATVDTTAKGAGDVYAAAVIAALHK DFSLIDAATHASNTVRAGLQTKAL >Mature_263_residues PSAGEEILEQRAQLEFDQRRADVVMIGSQVVYGSVGLSAAIPVMHNEGLRVVAVPTVVLSSMPRYASSHRQPMSDQWLAD ALQDLVDLGIIDEVSTISTGYFTSASQVRVVAAWLQKIRGTHPHVRIVVDPIMGDSDVGIYVADEIATAICQDLCPLATG IIPNAFELSHMVGSGDPRSLLGPFGEWIIVTSATETAGTTVTRIVTRDSVQEIASATVDTTAKGAGDVYAAAVIAALHKD FSLIDAATHASNTVRAGLQTKAL
Specific function: Phosphorylates B6 vitamers; functions in a salvage pathway. Uses pyridoxal, pyridoxine, and pyridoxamine as substrates [H]
COG id: COG2240
COG function: function code H; Pyridoxal/pyridoxine/pyridoxamine kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pyridoxine kinase family [H]
Homologues:
Organism=Escherichia coli, GI1788758, Length=251, Percent_Identity=39.8406374501992, Blast_Score=174, Evalue=5e-45, Organism=Escherichia coli, GI1787924, Length=249, Percent_Identity=25.7028112449799, Blast_Score=66, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013749 - InterPro: IPR004625 [H]
Pfam domain/function: PF08543 Phos_pyr_kin [H]
EC number: =2.7.1.35 [H]
Molecular weight: Translated: 27951; Mature: 27820
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSAGEEILEQRAQLEFDQRRADVVMIGSQVVYGSVGLSAAIPVMHNEGLRVVAVPTVVL CCCCHHHHHHHHHHCCHHHCCCCEEEECCEEEEECCCHHHCCCEEECCCCEEEEHHHHHH SSMPRYASSHRQPMSDQWLADALQDLVDLGIIDEVSTISTGYFTSASQVRVVAAWLQKIR HCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHC GTHPHVRIVVDPIMGDSDVGIYVADEIATAICQDLCPLATGIIPNAFELSHMVGSGDPRS CCCCEEEEEEECCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHH LLGPFGEWIIVTSATETAGTTVTRIVTRDSVQEIASATVDTTAKGAGDVYAAAVIAALHK HHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH DFSLIDAATHASNTVRAGLQTKAL CHHHHHHHHHCCHHHHHCCHHCCC >Mature Secondary Structure PSAGEEILEQRAQLEFDQRRADVVMIGSQVVYGSVGLSAAIPVMHNEGLRVVAVPTVVL CCCHHHHHHHHHHCCHHHCCCCEEEECCEEEEECCCHHHCCCEEECCCCEEEEHHHHHH SSMPRYASSHRQPMSDQWLADALQDLVDLGIIDEVSTISTGYFTSASQVRVVAAWLQKIR HCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHC GTHPHVRIVVDPIMGDSDVGIYVADEIATAICQDLCPLATGIIPNAFELSHMVGSGDPRS CCCCEEEEEEECCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHH LLGPFGEWIIVTSATETAGTTVTRIVTRDSVQEIASATVDTTAKGAGDVYAAAVIAALHK HHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH DFSLIDAATHASNTVRAGLQTKAL CHHHHHHHHHCCHHHHHCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA