| Definition | Corynebacterium glutamicum R chromosome, complete genome. |
|---|---|
| Accession | NC_009342 |
| Length | 3,314,179 |
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The map label for this gene is accD3 [H]
Identifier: 145295000
GI number: 145295000
Start: 1044189
End: 1045739
Strand: Reverse
Name: accD3 [H]
Synonym: cgR_0945
Alternate gene names: 145295000
Gene position: 1045739-1044189 (Counterclockwise)
Preceding gene: 145295004
Following gene: 145294997
Centisome position: 31.55
GC content: 58.22
Gene sequence:
>1551_bases TTGGACCTAGATCTTCCGCTTCTAAATAGGTATGCAGAGACATTCACATTAATTAACAAAGCCATTTTTCCAGCCGTGGA GAAGCGTTTTCCGACTATGGTGTGGGGCATGGAACACACTTCAGCATTGACGCTCATTGACTCGGTTTTGGACCCTGACA GCTTCATTTCTTGGGATGAAACTCCCCAATATAACAACCTCCATCAAGGCTATGCGGAGACCTTGGAGCAGGCTCGAAGC AAGGCCGAGTGCGATGAATCAGTGATTACTGGCGCAGGCACCGTGGAAGGCATTCCGGTAGCCGTTATTTTGTCTGATTT CTCCTTCCTCGGTGGTTCTTTAGGCACGGTCGCGTCGGTGCGCATCATGAAGGCGATTCACCGCGCCACAGAGCTGAAAC TCCCACTGCTGGTCTCCCCTGCTTCCGGTGGTGCGCGCATGCAGGAAGACAATCGAGCTTTTGTCATGATGGTGTCCATA ACCGCGGCTGTGCAGCGTCACCGCGAGGCGCATTTGCCGTTCCTGGTGTATTTGCGCAATCCCACGATGGGTGGCGCCAT GGCCTCGTGGGGTTCATCTGGGCATCTCACTTTTGCGGAACCCGGCGCGCAGATCGGTTTCCTGGGCCCTCGCGTGGTGG AGTTGACTACCGGGCGTGCGCTTCCAGACGGTGTGCAGCAGGCGGAGAATTTGGTGAAAACTGGTGTGATTGATGGCATT GTGTCGCCGCTCCAATTGCGTGCAGCGGTGGCAAAAACGCTCAAGATTATTCAGCCTGCAGAGGCAACCGATCGTTTTTC TCCAACAACTCCTGGCGCAGCGCTTCCGGTGATGGAGGCGATTGCGCGTTCTCGTGACCCGCACAGGCCTGGAATCGGGG AGATTATGGAAACGTTGGGGGCAGATGTCGTCAAGCTATCTGGTGCGCGTGCTGGCGCGTTGAGCCCGGCTGTGCGCGTT GCCCTGGCGCGCATCGGGGGCCGGCCTGTGGTGCTGATTGGGCAGGATCGCCGCTTCACGCTCGGGCCGCAGGAGCTGCG TTTTGCGCGCCGTGGCATTTCGTTGGCGCGCGAGCTGAACCTGCCGATCGTGTCCATCATCGACACCTCCGGCGCCGAAT TGTCGCAGGCTGCTGAGGAGCTCGGCATAGCAAGCTCGATTGCGCGCACCTTGTCCAAGCTTATCGACGCTCCCCTCCCC ACCGTTTCGGTAATTATTGGTCAGGGCGTTGGCGGTGGCGCGCTGGCCATGCTGCCCGCCGACCTGATCTACGCAGCCGA AAACGCGTGGCTGTCCGCATTACCGCCAGAGGGCGCCTCGGCCATCCTATTCCGCGACACCAACCACGCCGCGGAAATCA TGGAACGACAAGGCGTGCAGGCGCACGCACTTTTAAGCCAAGGGCTTATCGACGGGATCGTCGCCGAAACCGAGCATTTT GTTGAAGAAATTCTCGGCACAATCAGCAACGCCCTCTCCGAATTAGATAACAATCCGGAGAGGGCGGGACGCGACAGTCG CTTCACACGATTTGAGCGCCTAGCGCAGTAA
Upstream 100 bases:
>100_bases ATTCTGTCTGGTTTTAGGCTATGTTCGGGTCGTTTAGGCAAAAATAGTTTTGTGGGATGAAACGCATAATCCCTCAGTTT TGCGCAATCGATAGCCTGAA
Downstream 100 bases:
>100_bases AGAAAACTATGCGCTGATCAAATCGATAATGAACACCAGGGTACGGCCAGACAGTGGGTGGCCGGAACCCTCAGGGCCGT AAGCAGCCTCTGGTGGAATG
Product: hypothetical protein
Products: NA
Alternate protein names: ACCase beta chain [H]
Number of amino acids: Translated: 516; Mature: 516
Protein sequence:
>516_residues MDLDLPLLNRYAETFTLINKAIFPAVEKRFPTMVWGMEHTSALTLIDSVLDPDSFISWDETPQYNNLHQGYAETLEQARS KAECDESVITGAGTVEGIPVAVILSDFSFLGGSLGTVASVRIMKAIHRATELKLPLLVSPASGGARMQEDNRAFVMMVSI TAAVQRHREAHLPFLVYLRNPTMGGAMASWGSSGHLTFAEPGAQIGFLGPRVVELTTGRALPDGVQQAENLVKTGVIDGI VSPLQLRAAVAKTLKIIQPAEATDRFSPTTPGAALPVMEAIARSRDPHRPGIGEIMETLGADVVKLSGARAGALSPAVRV ALARIGGRPVVLIGQDRRFTLGPQELRFARRGISLARELNLPIVSIIDTSGAELSQAAEELGIASSIARTLSKLIDAPLP TVSVIIGQGVGGGALAMLPADLIYAAENAWLSALPPEGASAILFRDTNHAAEIMERQGVQAHALLSQGLIDGIVAETEHF VEEILGTISNALSELDNNPERAGRDSRFTRFERLAQ
Sequences:
>Translated_516_residues MDLDLPLLNRYAETFTLINKAIFPAVEKRFPTMVWGMEHTSALTLIDSVLDPDSFISWDETPQYNNLHQGYAETLEQARS KAECDESVITGAGTVEGIPVAVILSDFSFLGGSLGTVASVRIMKAIHRATELKLPLLVSPASGGARMQEDNRAFVMMVSI TAAVQRHREAHLPFLVYLRNPTMGGAMASWGSSGHLTFAEPGAQIGFLGPRVVELTTGRALPDGVQQAENLVKTGVIDGI VSPLQLRAAVAKTLKIIQPAEATDRFSPTTPGAALPVMEAIARSRDPHRPGIGEIMETLGADVVKLSGARAGALSPAVRV ALARIGGRPVVLIGQDRRFTLGPQELRFARRGISLARELNLPIVSIIDTSGAELSQAAEELGIASSIARTLSKLIDAPLP TVSVIIGQGVGGGALAMLPADLIYAAENAWLSALPPEGASAILFRDTNHAAEIMERQGVQAHALLSQGLIDGIVAETEHF VEEILGTISNALSELDNNPERAGRDSRFTRFERLAQ >Mature_516_residues MDLDLPLLNRYAETFTLINKAIFPAVEKRFPTMVWGMEHTSALTLIDSVLDPDSFISWDETPQYNNLHQGYAETLEQARS KAECDESVITGAGTVEGIPVAVILSDFSFLGGSLGTVASVRIMKAIHRATELKLPLLVSPASGGARMQEDNRAFVMMVSI TAAVQRHREAHLPFLVYLRNPTMGGAMASWGSSGHLTFAEPGAQIGFLGPRVVELTTGRALPDGVQQAENLVKTGVIDGI VSPLQLRAAVAKTLKIIQPAEATDRFSPTTPGAALPVMEAIARSRDPHRPGIGEIMETLGADVVKLSGARAGALSPAVRV ALARIGGRPVVLIGQDRRFTLGPQELRFARRGISLARELNLPIVSIIDTSGAELSQAAEELGIASSIARTLSKLIDAPLP TVSVIIGQGVGGGALAMLPADLIYAAENAWLSALPPEGASAILFRDTNHAAEIMERQGVQAHALLSQGLIDGIVAETEHF VEEILGTISNALSELDNNPERAGRDSRFTRFERLAQ
Specific function: This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA [H]
COG id: COG0777
COG function: function code I; Acetyl-CoA carboxylase beta subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AccD/PCCB family [H]
Homologues:
Organism=Escherichia coli, GI1788655, Length=214, Percent_Identity=36.9158878504673, Blast_Score=141, Evalue=1e-34, Organism=Escherichia coli, GI1786382, Length=204, Percent_Identity=32.843137254902, Blast_Score=98, Evalue=1e-21, Organism=Caenorhabditis elegans, GI25147359, Length=458, Percent_Identity=23.7991266375546, Blast_Score=95, Evalue=9e-20, Organism=Caenorhabditis elegans, GI25147362, Length=458, Percent_Identity=23.7991266375546, Blast_Score=95, Evalue=1e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000438 - InterPro: IPR000022 - InterPro: IPR011763 - InterPro: IPR011762 [H]
Pfam domain/function: PF01039 Carboxyl_trans [H]
EC number: =6.4.1.2 [H]
Molecular weight: Translated: 55026; Mature: 55026
Theoretical pI: Translated: 5.35; Mature: 5.35
Prosite motif: PS50980 COA_CT_NTER ; PS50989 COA_CT_CTER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLDLPLLNRYAETFTLINKAIFPAVEKRFPTMVWGMEHTSALTLIDSVLDPDSFISWDE CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHEECCCHHHHHHHHHHHCCCCCCCCCCC TPQYNNLHQGYAETLEQARSKAECDESVITGAGTVEGIPVAVILSDFSFLGGSLGTVASV CCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHH RIMKAIHRATELKLPLLVSPASGGARMQEDNRAFVMMVSITAAVQRHREAHLPFLVYLRN HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCEEEEEEC PTMGGAMASWGSSGHLTFAEPGAQIGFLGPRVVELTTGRALPDGVQQAENLVKTGVIDGI CCCCCHHHCCCCCCCEEECCCCCCEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH VSPLQLRAAVAKTLKIIQPAEATDRFSPTTPGAALPVMEAIARSRDPHRPGIGEIMETLG HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHC ADVVKLSGARAGALSPAVRVALARIGGRPVVLIGQDRRFTLGPQELRFARRGISLARELN CCCEEECCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC LPIVSIIDTSGAELSQAAEELGIASSIARTLSKLIDAPLPTVSVIIGQGVGGGALAMLPA CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHEEECCCCCCHHHHHHH DLIYAAENAWLSALPPEGASAILFRDTNHAAEIMERQGVQAHALLSQGLIDGIVAETEHF HHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH VEEILGTISNALSELDNNPERAGRDSRFTRFERLAQ HHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHCC >Mature Secondary Structure MDLDLPLLNRYAETFTLINKAIFPAVEKRFPTMVWGMEHTSALTLIDSVLDPDSFISWDE CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHEECCCHHHHHHHHHHHCCCCCCCCCCC TPQYNNLHQGYAETLEQARSKAECDESVITGAGTVEGIPVAVILSDFSFLGGSLGTVASV CCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHH RIMKAIHRATELKLPLLVSPASGGARMQEDNRAFVMMVSITAAVQRHREAHLPFLVYLRN HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCEEEEEEC PTMGGAMASWGSSGHLTFAEPGAQIGFLGPRVVELTTGRALPDGVQQAENLVKTGVIDGI CCCCCHHHCCCCCCCEEECCCCCCEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH VSPLQLRAAVAKTLKIIQPAEATDRFSPTTPGAALPVMEAIARSRDPHRPGIGEIMETLG HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHC ADVVKLSGARAGALSPAVRVALARIGGRPVVLIGQDRRFTLGPQELRFARRGISLARELN CCCEEECCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC LPIVSIIDTSGAELSQAAEELGIASSIARTLSKLIDAPLPTVSVIIGQGVGGGALAMLPA CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHEEECCCCCCHHHHHHH DLIYAAENAWLSALPPEGASAILFRDTNHAAEIMERQGVQAHALLSQGLIDGIVAETEHF HHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH VEEILGTISNALSELDNNPERAGRDSRFTRFERLAQ HHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]