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The map label for this gene is lytR [H]

Identifier: 145294902

GI number: 145294902

Start: 937491

End: 939050

Strand: Reverse

Name: lytR [H]

Synonym: cgR_0849

Alternate gene names: 145294902

Gene position: 939050-937491 (Counterclockwise)

Preceding gene: 145294906

Following gene: 145294901

Centisome position: 28.33

GC content: 58.27

Gene sequence:

>1560_bases
GTGACTGAAAAGTATCGTCCCGTCCGTGACATTAAGCCTGCTCCGGCAGCAATGCAATCAACTAAACAAGCGGGCCATCC
TGTGTTCCGAAGCGTTGTAGCTTTTGTTTCAGTGCTGGTGTTGTTGGTATCGGGTTTGGGGTATCTTGCTGTCGGAAAAG
TGGACGGTGTCGCTTCTGGCAACTTGAACCTTGGTGGCGGTCGCGGCATCCAGGACGGCAATGCTGCTGACGGTGCTACC
GATATTTTGTTGGTGGGTTCTGATTCCCGTTCCGATGCTCAGGGCAACACGCTGACTGAGGAGGAGCTGGCGATGCTCCG
CGCAGGCGACGAGGAGAACGACAACACCGATACGATCATGGTGATTCGTGTTCCTAACGATGGTTCCTCTGCCACCGCTG
TGTCGATTCCTCGCGATACCTATATTCATGATGACGATTACGGCAACATGAAGATCAACGGCGTTTACGGTGCGTACAAG
GATGCCCGTCGCGCTGAGCTCATGGAACAAGGTTTCACCAATGAGTCAGAGCTGGAAACCCGGGCGAAGGATGCTGGCCG
AGAAGGTTTGATCGATGCTGTGTCAGATCTCACCGGCATCACCGTCGATCACTACGCCGAAGTTGGCCTTTTGGGATTCG
TCCTCCTCACCGATGCTGTCGGTGGTGTCGAAGTCTGCCTCAACAACGCCGTCGATGAGCCTTTATCCGGCGCCAACTTC
CCTGCAGGCCGTCAAACCCTCGGTGGCTCCGATGCGTTGTCTTATGTGCGCCAGCGCCACGATCTCCCCCGCGGCGACCT
CGACCGCATCGTCCGCCAGCAGTCGTATATGGCATCGCTTGTTAATCAGGTGCTGTCTTCTGGAACACTCACCAACCCTG
CAAAGCTTTCCGCACTTGCTGATGCCGTCACCCGCTCCGTCGTCATCGACGAAGGCTGGGAGATCATGAGCTTTGCCACT
CAGCTGCAAAACCTCGCGGGCGGCAACGTCACTTTCGGCACCATCCCAGTGACTTCCATTGACGGCACCGGCGATTACGG
CGAGTCCGTTGTCACCATCGATGTCAACCAGGTGCACGCATTCTTCCAAGAAGCACTCGGCGAAACAGAACCAGCCCCAG
AAGACGGGTCCGCCGATCAACCTGCTGATCAGGCCCCTGACCTAAGCGAAGTCGAGGTTCACGTCCTCAACGCTTCCTAC
ACCGAGGGCCTCGCCAACGGCATTGCAGCGCACCTCCAGGAAATGGGGTACACCATCTCCGAAACTGGCAACGCAGCGGA
AGGCCTCTACTACGAGTCCCAGATCCTCGCCGCCGAAGCAGACAACGAAAAGGCCCTCGCGATTTCCGAAGCCCTCGGCG
GCCTCCCCATCGTGGCCAACTCTTCCCTCGACGACAACACCGTCATCGTTGTATCCGCCGGCGATTACGCTGGTCCTACC
GCTGAAGCCAACGCTGTCATCACCAGCAGCACCGTCGGCCAGCCGGGCGCCGATGTCGGAGCGCCCATCGAAAGCCCAGA
GTTTGATGCCGGCGGCGACGGCCCGCGCTGCGTGAACTAA

Upstream 100 bases:

>100_bases
CAAGCAGCCAATGGCCGCGTATGAACCCCCCCGCTCCATGAATACAGAACACATACAGAACTTGACCGACAATCTAATTA
CCGCGAAGGGTTAGCAGCAC

Downstream 100 bases:

>100_bases
AAGATTTTCGCTTTTCGACGCCTCCCTCCGGCCCTTACCCGCCGGAGGGATTTTTCGTTCAAGCACAGTCTGTATCTTTT
ATTTACTCTGGGGGTCATGG

Product: hypothetical protein

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 519; Mature: 518

Protein sequence:

>519_residues
MTEKYRPVRDIKPAPAAMQSTKQAGHPVFRSVVAFVSVLVLLVSGLGYLAVGKVDGVASGNLNLGGGRGIQDGNAADGAT
DILLVGSDSRSDAQGNTLTEEELAMLRAGDEENDNTDTIMVIRVPNDGSSATAVSIPRDTYIHDDDYGNMKINGVYGAYK
DARRAELMEQGFTNESELETRAKDAGREGLIDAVSDLTGITVDHYAEVGLLGFVLLTDAVGGVEVCLNNAVDEPLSGANF
PAGRQTLGGSDALSYVRQRHDLPRGDLDRIVRQQSYMASLVNQVLSSGTLTNPAKLSALADAVTRSVVIDEGWEIMSFAT
QLQNLAGGNVTFGTIPVTSIDGTGDYGESVVTIDVNQVHAFFQEALGETEPAPEDGSADQPADQAPDLSEVEVHVLNASY
TEGLANGIAAHLQEMGYTISETGNAAEGLYYESQILAAEADNEKALAISEALGGLPIVANSSLDDNTVIVVSAGDYAGPT
AEANAVITSSTVGQPGADVGAPIESPEFDAGGDGPRCVN

Sequences:

>Translated_519_residues
MTEKYRPVRDIKPAPAAMQSTKQAGHPVFRSVVAFVSVLVLLVSGLGYLAVGKVDGVASGNLNLGGGRGIQDGNAADGAT
DILLVGSDSRSDAQGNTLTEEELAMLRAGDEENDNTDTIMVIRVPNDGSSATAVSIPRDTYIHDDDYGNMKINGVYGAYK
DARRAELMEQGFTNESELETRAKDAGREGLIDAVSDLTGITVDHYAEVGLLGFVLLTDAVGGVEVCLNNAVDEPLSGANF
PAGRQTLGGSDALSYVRQRHDLPRGDLDRIVRQQSYMASLVNQVLSSGTLTNPAKLSALADAVTRSVVIDEGWEIMSFAT
QLQNLAGGNVTFGTIPVTSIDGTGDYGESVVTIDVNQVHAFFQEALGETEPAPEDGSADQPADQAPDLSEVEVHVLNASY
TEGLANGIAAHLQEMGYTISETGNAAEGLYYESQILAAEADNEKALAISEALGGLPIVANSSLDDNTVIVVSAGDYAGPT
AEANAVITSSTVGQPGADVGAPIESPEFDAGGDGPRCVN
>Mature_518_residues
TEKYRPVRDIKPAPAAMQSTKQAGHPVFRSVVAFVSVLVLLVSGLGYLAVGKVDGVASGNLNLGGGRGIQDGNAADGATD
ILLVGSDSRSDAQGNTLTEEELAMLRAGDEENDNTDTIMVIRVPNDGSSATAVSIPRDTYIHDDDYGNMKINGVYGAYKD
ARRAELMEQGFTNESELETRAKDAGREGLIDAVSDLTGITVDHYAEVGLLGFVLLTDAVGGVEVCLNNAVDEPLSGANFP
AGRQTLGGSDALSYVRQRHDLPRGDLDRIVRQQSYMASLVNQVLSSGTLTNPAKLSALADAVTRSVVIDEGWEIMSFATQ
LQNLAGGNVTFGTIPVTSIDGTGDYGESVVTIDVNQVHAFFQEALGETEPAPEDGSADQPADQAPDLSEVEVHVLNASYT
EGLANGIAAHLQEMGYTISETGNAAEGLYYESQILAAEADNEKALAISEALGGLPIVANSSLDDNTVIVVSAGDYAGPTA
EANAVITSSTVGQPGADVGAPIESPEFDAGGDGPRCVN

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 54040; Mature: 53909

Theoretical pI: Translated: 3.94; Mature: 3.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEKYRPVRDIKPAPAAMQSTKQAGHPVFRSVVAFVSVLVLLVSGLGYLAVGKVDGVASG
CCCCCCCHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCC
NLNLGGGRGIQDGNAADGATDILLVGSDSRSDAQGNTLTEEELAMLRAGDEENDNTDTIM
CEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEE
VIRVPNDGSSATAVSIPRDTYIHDDDYGNMKINGVYGAYKDARRAELMEQGFTNESELET
EEEECCCCCCCEEEECCCCCEECCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCHHHHHH
RAKDAGREGLIDAVSDLTGITVDHYAEVGLLGFVLLTDAVGGVEVCLNNAVDEPLSGANF
HHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCC
PAGRQTLGGSDALSYVRQRHDLPRGDLDRIVRQQSYMASLVNQVLSSGTLTNPAKLSALA
CCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
DAVTRSVVIDEGWEIMSFATQLQNLAGGNVTFGTIPVTSIDGTGDYGESVVTIDVNQVHA
HHHHHHHEECCCHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCEEEEEEHHHHHH
FFQEALGETEPAPEDGSADQPADQAPDLSEVEVHVLNASYTEGLANGIAAHLQEMGYTIS
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCEEE
ETGNAAEGLYYESQILAAEADNEKALAISEALGGLPIVANSSLDDNTVIVVSAGDYAGPT
CCCCCCCCEEEECEEEEEECCCCCCEEHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCC
AEANAVITSSTVGQPGADVGAPIESPEFDAGGDGPRCVN
CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TEKYRPVRDIKPAPAAMQSTKQAGHPVFRSVVAFVSVLVLLVSGLGYLAVGKVDGVASG
CCCCCCHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCC
NLNLGGGRGIQDGNAADGATDILLVGSDSRSDAQGNTLTEEELAMLRAGDEENDNTDTIM
CEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEE
VIRVPNDGSSATAVSIPRDTYIHDDDYGNMKINGVYGAYKDARRAELMEQGFTNESELET
EEEECCCCCCCEEEECCCCCEECCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCHHHHHH
RAKDAGREGLIDAVSDLTGITVDHYAEVGLLGFVLLTDAVGGVEVCLNNAVDEPLSGANF
HHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCC
PAGRQTLGGSDALSYVRQRHDLPRGDLDRIVRQQSYMASLVNQVLSSGTLTNPAKLSALA
CCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
DAVTRSVVIDEGWEIMSFATQLQNLAGGNVTFGTIPVTSIDGTGDYGESVVTIDVNQVHA
HHHHHHHEECCCHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCEEEEEEHHHHHH
FFQEALGETEPAPEDGSADQPADQAPDLSEVEVHVLNASYTEGLANGIAAHLQEMGYTIS
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCEEE
ETGNAAEGLYYESQILAAEADNEKALAISEALGGLPIVANSSLDDNTVIVVSAGDYAGPT
CCCCCCCCEEEECEEEEEECCCCCCEEHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCC
AEANAVITSSTVGQPGADVGAPIESPEFDAGGDGPRCVN
CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12663927 [H]