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The map label for this gene is yvbU [H]

Identifier: 145294822

GI number: 145294822

Start: 849026

End: 849934

Strand: Reverse

Name: yvbU [H]

Synonym: cgR_0769

Alternate gene names: 145294822

Gene position: 849934-849026 (Counterclockwise)

Preceding gene: 145294827

Following gene: 145294821

Centisome position: 25.65

GC content: 46.86

Gene sequence:

>909_bases
GTGGCAAAATCTGCATCCAGCATCACACTTAATCAATTGAGATATTTCGTCCGCACCGTCGAATTAGGATCGATGACTGC
TACAGCGGAGGAGCTATTTCTTGCACAATCAGCAGTCTCGACTTCAATTGCTCAACTCGAACACGCCGTTGGATGCAAAC
TACTAATCAGACAGCGCGCCCGTGGCGTAGTAACCACCGATCAAGGAAGCACATTCTATAGATCCGCAGCAGGAATCTTG
GCAGCCGTTGATGAAGCAGTTAATCAGCTTTCCTCGGAAACTCTCACGGGCACCCTAACCGCTGGCTGCTTTACCACGCT
TGCACCGTTCTACCTTCCTGTAGCTTTTGAAAATCTAACAAATACCTATCCAGAACTTTCACTCAGAATTTCTGAAGTTG
CGAGTGAACAGATCTCTCAAAAACTGACACGAAGAGAACTCGAAGTTGTCTTAACTTACGGGTTTGATTACGGGCCAGAA
GTCGAATTTATCCAACTCGCAGAAGCTCCGGTATACGCGGCATTTGGAGAATCCCATCCTCTCGCAAATCAGTCGGAAGT
CTCTTTGGAACAACTAGCAAGAGAGTCCCTCATCCTTCTGGACCTTGGAAAATCAACAAACTACTTTCTGTCAATTTTCC
GCGATGCACATCTCTCCCCTCGAATCCATCAACGATTTGAAAGCTTTGAAGTCGTTAGATCAATGGTCGCCAGAGGTCAC
GGATACACAATTCTCAACCAACGTCCTGCGCATGATCTCACTAACGATGGACATCGTCTGATTCGGCTCCCGATCACCGA
CTCCCGATCACTTTTGCAAATCGGGGTAGCGATTCGCGCAAATGAATCTCCATCCAAGAAGGCACAGGCATTCATCAAAG
AGTGCCGAGAAATTTTAACTTCAAGTTAA

Upstream 100 bases:

>100_bases
GCACCCGTAAGCAAATATCATTAATCGGCCAATTACATCAAAAAAACTGATACAAAGTGGGAAGATAGATCACACAATCA
AATTTCACCAAAGGAGAAGC

Downstream 100 bases:

>100_bases
CCCCACCCCTTCTCCTTAGCCCCGCCTAGCATTTGGACTATTTCAAGTTGCATCGCAGAACTTTCCAATTCTGCACACAA
GCTCGTGATTTTAGTTTTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MAKSASSITLNQLRYFVRTVELGSMTATAEELFLAQSAVSTSIAQLEHAVGCKLLIRQRARGVVTTDQGSTFYRSAAGIL
AAVDEAVNQLSSETLTGTLTAGCFTTLAPFYLPVAFENLTNTYPELSLRISEVASEQISQKLTRRELEVVLTYGFDYGPE
VEFIQLAEAPVYAAFGESHPLANQSEVSLEQLARESLILLDLGKSTNYFLSIFRDAHLSPRIHQRFESFEVVRSMVARGH
GYTILNQRPAHDLTNDGHRLIRLPITDSRSLLQIGVAIRANESPSKKAQAFIKECREILTSS

Sequences:

>Translated_302_residues
MAKSASSITLNQLRYFVRTVELGSMTATAEELFLAQSAVSTSIAQLEHAVGCKLLIRQRARGVVTTDQGSTFYRSAAGIL
AAVDEAVNQLSSETLTGTLTAGCFTTLAPFYLPVAFENLTNTYPELSLRISEVASEQISQKLTRRELEVVLTYGFDYGPE
VEFIQLAEAPVYAAFGESHPLANQSEVSLEQLARESLILLDLGKSTNYFLSIFRDAHLSPRIHQRFESFEVVRSMVARGH
GYTILNQRPAHDLTNDGHRLIRLPITDSRSLLQIGVAIRANESPSKKAQAFIKECREILTSS
>Mature_301_residues
AKSASSITLNQLRYFVRTVELGSMTATAEELFLAQSAVSTSIAQLEHAVGCKLLIRQRARGVVTTDQGSTFYRSAAGILA
AVDEAVNQLSSETLTGTLTAGCFTTLAPFYLPVAFENLTNTYPELSLRISEVASEQISQKLTRRELEVVLTYGFDYGPEV
EFIQLAEAPVYAAFGESHPLANQSEVSLEQLARESLILLDLGKSTNYFLSIFRDAHLSPRIHQRFESFEVVRSMVARGHG
YTILNQRPAHDLTNDGHRLIRLPITDSRSLLQIGVAIRANESPSKKAQAFIKECREILTSS

Specific function: Hydrogen Peroxide Sensor. Activates The Expression Of A Regulon Of Hydrogen Peroxide-Inducible Genes Such As Katg, Gor, Ahpc, Ahpf, Oxys (A Regulatory RNA), Dps, Fur And Grxa. Oxyr Expression Is Negatively Autoregulated By Binding To A 43 Bp Region Upstre

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790399, Length=280, Percent_Identity=27.1428571428571, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787879, Length=248, Percent_Identity=29.8387096774194, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI157672245, Length=288, Percent_Identity=27.7777777777778, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1788887, Length=244, Percent_Identity=27.0491803278689, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1787601, Length=269, Percent_Identity=26.0223048327138, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788481, Length=258, Percent_Identity=29.8449612403101, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789173, Length=150, Percent_Identity=31.3333333333333, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788297, Length=152, Percent_Identity=30.2631578947368, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787530, Length=252, Percent_Identity=25.3968253968254, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790262, Length=228, Percent_Identity=24.1228070175439, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33318; Mature: 33187

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKSASSITLNQLRYFVRTVELGSMTATAEELFLAQSAVSTSIAQLEHAVGCKLLIRQRA
CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGVVTTDQGSTFYRSAAGILAAVDEAVNQLSSETLTGTLTAGCFTTLAPFYLPVAFENLT
CCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NTYPELSLRISEVASEQISQKLTRRELEVVLTYGFDYGPEVEFIQLAEAPVYAAFGESHP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCEEEECCCCEEEECCCCCC
LANQSEVSLEQLARESLILLDLGKSTNYFLSIFRDAHLSPRIHQRFESFEVVRSMVARGH
CCCCHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
GYTILNQRPAHDLTNDGHRLIRLPITDSRSLLQIGVAIRANESPSKKAQAFIKECREILT
CEEEECCCCCCCCCCCCCEEEEEECCCCCHHHHEEEEEECCCCCHHHHHHHHHHHHHHHC
SS
CC
>Mature Secondary Structure 
AKSASSITLNQLRYFVRTVELGSMTATAEELFLAQSAVSTSIAQLEHAVGCKLLIRQRA
CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGVVTTDQGSTFYRSAAGILAAVDEAVNQLSSETLTGTLTAGCFTTLAPFYLPVAFENLT
CCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NTYPELSLRISEVASEQISQKLTRRELEVVLTYGFDYGPEVEFIQLAEAPVYAAFGESHP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCEEEECCCCEEEECCCCCC
LANQSEVSLEQLARESLILLDLGKSTNYFLSIFRDAHLSPRIHQRFESFEVVRSMVARGH
CCCCHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
GYTILNQRPAHDLTNDGHRLIRLPITDSRSLLQIGVAIRANESPSKKAQAFIKECREILT
CEEEECCCCCCCCCCCCCEEEEEECCCCCHHHHEEEEEECCCCCHHHHHHHHHHHHHHHC
SS
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]