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The map label for this gene is ydeP [C]

Identifier: 145294680

GI number: 145294680

Start: 687443

End: 689731

Strand: Reverse

Name: ydeP [C]

Synonym: cgR_0628

Alternate gene names: 145294680

Gene position: 689731-687443 (Counterclockwise)

Preceding gene: 145294682

Following gene: 145294679

Centisome position: 20.81

GC content: 52.42

Gene sequence:

>2289_bases
ATGACAACCCCTCCAACTGAGATTTCGAACGTGAATCCCACCGCGAATGAATTTGATGATCCGGATGTGGGACGGCGCAT
TACTTCTGCTGCTGGTGTGCCAGGCGTTTTGCATGCCCTCCAGCATGCTATTCCGAATCGTGCCTTATTGCCGTTGCTCA
CCATGAATAAACCAGGTGGCATCGACTGTCCTGGTTGTGCTTGGCCTGAGCCTTCCACTGCCAACCTCGGTGTGGTTGAG
TTCTGCGAGAACGGTGCCAAGGCGGTCGCCGAGGAAACAACACCTGATCGTGCTGGCAGAGAGTTCTGGGCAGAGCATTC
TATTTATGATCTGCGGGAAAAGACCGATCACTGGCTGGGCAAGCGTGGCCGAATCACCGAGCCCATGTTTTATGATCGTT
CTTCTGGCGATGATCACTACCGCCCTATTTCTTGGGATCGTGCATTTGAGATCATTGCTTCAAAACTCCGCGAAATCGAG
CCAGATGAAGCGGTGTTTTACACCTCTGGTCGAGCACCCAATGAGCCGGCTTATATGCTGCAGCTTCTAGCCCGCCGACT
TGGCACAAATAACCTTCCAGACTGTGGAAACATGTGCCACGAGTCCACCGGTACTGCCTTAGGTGAGACCTTGGGTTTGG
GCAAGGGATCCGTGGTGATGGAGGATTTCTACAACACTGATTTGTTGATTTCCGTGGGACAAAACCCGGGCACCAACCAC
CCACGTGCGTTGACGGCTTTCAAAGAATTGAAGGAAAACGGTGGCAAGATTCTGGCGCTGAACCCCATGCCAGAGACCGG
TCTGATGAAATTCCGTGAGCCCCAATCAGTCAAGGGCGCGTTGAGCATTTCAGACAAACTTGCTGATGAATACTTGCAGA
TCCGTCTTGATGGAGACCGCGCATTCTTCCAGGCGCTCAACAAGGAACTCATCCGTAGAGGTGCCCTAGATCATGCATTC
TTGGATAAATTCTGTTCAGGTGTGGATGAAACCATCGAGCACCTCAAATCACTCGATGATGAGGTTCTGCTCAAGGGATG
CGGTCTGACGGCAGCGGAGATCAACAAGGCCGCTGACATGGTGGAAAAGTCTGACACCGTGGTGGTGTCATGGACTCTCG
GGGTCACCCAGCATAAGAACGCTGTGTACACCATCCGTGAAATGGTGAACTTCCTGCTGCTTACTGGAAATATCGGTAAG
CCTGGCGCAGGCACTGCCCCGCTTCGTGGGCACTCAAACGTCCAGGGTGATCGCACCATGGGTATTTGGGAGAAAATGCC
GGAGTCATTCCTTGCTGCTCTTGAAAACGAGTTTGGTTTTGATGTGCCACGCAAGCACGGCTTCGACACGGTGGATTCCC
TGCGAGCCATGCGCGAAGGCAAGACCAAGTTCTTTCTCTCCCTCGGTGGCAACCTCGTTCGAGTGTCCTCAGATACGTCT
GTTGTCGAAAAGGGCATGGAATCCAATGAGCTGACGGTGCATCTGTCGACCAAGCCCAATGGTTCACAAGCATGGCCTGG
TGAGCAGTCACTTATCCTTCCAGTGATTGCTCGAACAGATAAGGATGTCCAAAAGTCAGGCGTCCAGCGTGTGACAGTTG
AGGATTCCGCAGGTGCCGTTCACGCATCCACTGGTAAACGAACCGCCAACAAGGATCTGAATTTGAAGTCCGAATGCGAC
ATCATTGGAACCATCGGTAAGCAGACCTTCGGTGATGCCTTCTGGCAGCCCATGATTGATAACTACGATGTGGTCCGCGA
TCACATCGAGGCCACCATTCCTGGGTTCCACGATTTCAACCGTCGCATCGACAACCCCGGTGGATTCCTCCTCCCCAACG
GACCTCGTGAGCGCATCTTCAACACATCCAATGGCAAGGCCCAATTGACGGTTAATGAAACCAATGTGATTGAGCTGCCC
AAGGACTATTTGCTTATGAACACGGTACGTTCACATGATCAATACAACTCCACGATTTACGGTCTGGATGACCGCTACCG
CGGTGTTCGCAATGGTCGCCGCGTAGTATTCGTCAATCCTCAAGATTGTAAGCAACGCGGTCTCAAGGATGGAGACATCG
TAGACATCGTCTCTGTGTTTGATGATGGCGAACGCCGAGCACCGAATTTCCGAGTGGTGGAATATGACACCGCGAGGGAC
TGCGTCACCACGTATTTCCCTGAGGCCAACGTTTTGGTTCCATTGGATTCGGTAGCTGAAAGATCCAACACTCCAGTGTC
CAAGTCAGTTGTGGTTCGTCTTGAAGCAACAGGACGTACCGCTTCTTAA

Upstream 100 bases:

>100_bases
CTGCGAGTTCTCTTGATTTTCGGTTTTCCACATACCCCCATATAGATTGAAGAATTCTTTTTTCGGCATGGGTTCAAATG
TGGGGTCTAGACTGTGACCT

Downstream 100 bases:

>100_bases
AAAACGCCAGGGAATTTTCCGCGCCCGCTTCCTTGTTTGAATAAACGAGGATGCGGGCTTATTTACAATTGCAGTTTTAC
AATTGCAGCCATCATCAGAA

Product: hypothetical protein

Products: CO2; NADH

Alternate protein names: NA

Number of amino acids: Translated: 762; Mature: 761

Protein sequence:

>762_residues
MTTPPTEISNVNPTANEFDDPDVGRRITSAAGVPGVLHALQHAIPNRALLPLLTMNKPGGIDCPGCAWPEPSTANLGVVE
FCENGAKAVAEETTPDRAGREFWAEHSIYDLREKTDHWLGKRGRITEPMFYDRSSGDDHYRPISWDRAFEIIASKLREIE
PDEAVFYTSGRAPNEPAYMLQLLARRLGTNNLPDCGNMCHESTGTALGETLGLGKGSVVMEDFYNTDLLISVGQNPGTNH
PRALTAFKELKENGGKILALNPMPETGLMKFREPQSVKGALSISDKLADEYLQIRLDGDRAFFQALNKELIRRGALDHAF
LDKFCSGVDETIEHLKSLDDEVLLKGCGLTAAEINKAADMVEKSDTVVVSWTLGVTQHKNAVYTIREMVNFLLLTGNIGK
PGAGTAPLRGHSNVQGDRTMGIWEKMPESFLAALENEFGFDVPRKHGFDTVDSLRAMREGKTKFFLSLGGNLVRVSSDTS
VVEKGMESNELTVHLSTKPNGSQAWPGEQSLILPVIARTDKDVQKSGVQRVTVEDSAGAVHASTGKRTANKDLNLKSECD
IIGTIGKQTFGDAFWQPMIDNYDVVRDHIEATIPGFHDFNRRIDNPGGFLLPNGPRERIFNTSNGKAQLTVNETNVIELP
KDYLLMNTVRSHDQYNSTIYGLDDRYRGVRNGRRVVFVNPQDCKQRGLKDGDIVDIVSVFDDGERRAPNFRVVEYDTARD
CVTTYFPEANVLVPLDSVAERSNTPVSKSVVVRLEATGRTAS

Sequences:

>Translated_762_residues
MTTPPTEISNVNPTANEFDDPDVGRRITSAAGVPGVLHALQHAIPNRALLPLLTMNKPGGIDCPGCAWPEPSTANLGVVE
FCENGAKAVAEETTPDRAGREFWAEHSIYDLREKTDHWLGKRGRITEPMFYDRSSGDDHYRPISWDRAFEIIASKLREIE
PDEAVFYTSGRAPNEPAYMLQLLARRLGTNNLPDCGNMCHESTGTALGETLGLGKGSVVMEDFYNTDLLISVGQNPGTNH
PRALTAFKELKENGGKILALNPMPETGLMKFREPQSVKGALSISDKLADEYLQIRLDGDRAFFQALNKELIRRGALDHAF
LDKFCSGVDETIEHLKSLDDEVLLKGCGLTAAEINKAADMVEKSDTVVVSWTLGVTQHKNAVYTIREMVNFLLLTGNIGK
PGAGTAPLRGHSNVQGDRTMGIWEKMPESFLAALENEFGFDVPRKHGFDTVDSLRAMREGKTKFFLSLGGNLVRVSSDTS
VVEKGMESNELTVHLSTKPNGSQAWPGEQSLILPVIARTDKDVQKSGVQRVTVEDSAGAVHASTGKRTANKDLNLKSECD
IIGTIGKQTFGDAFWQPMIDNYDVVRDHIEATIPGFHDFNRRIDNPGGFLLPNGPRERIFNTSNGKAQLTVNETNVIELP
KDYLLMNTVRSHDQYNSTIYGLDDRYRGVRNGRRVVFVNPQDCKQRGLKDGDIVDIVSVFDDGERRAPNFRVVEYDTARD
CVTTYFPEANVLVPLDSVAERSNTPVSKSVVVRLEATGRTAS
>Mature_761_residues
TTPPTEISNVNPTANEFDDPDVGRRITSAAGVPGVLHALQHAIPNRALLPLLTMNKPGGIDCPGCAWPEPSTANLGVVEF
CENGAKAVAEETTPDRAGREFWAEHSIYDLREKTDHWLGKRGRITEPMFYDRSSGDDHYRPISWDRAFEIIASKLREIEP
DEAVFYTSGRAPNEPAYMLQLLARRLGTNNLPDCGNMCHESTGTALGETLGLGKGSVVMEDFYNTDLLISVGQNPGTNHP
RALTAFKELKENGGKILALNPMPETGLMKFREPQSVKGALSISDKLADEYLQIRLDGDRAFFQALNKELIRRGALDHAFL
DKFCSGVDETIEHLKSLDDEVLLKGCGLTAAEINKAADMVEKSDTVVVSWTLGVTQHKNAVYTIREMVNFLLLTGNIGKP
GAGTAPLRGHSNVQGDRTMGIWEKMPESFLAALENEFGFDVPRKHGFDTVDSLRAMREGKTKFFLSLGGNLVRVSSDTSV
VEKGMESNELTVHLSTKPNGSQAWPGEQSLILPVIARTDKDVQKSGVQRVTVEDSAGAVHASTGKRTANKDLNLKSECDI
IGTIGKQTFGDAFWQPMIDNYDVVRDHIEATIPGFHDFNRRIDNPGGFLLPNGPRERIFNTSNGKAQLTVNETNVIELPK
DYLLMNTVRSHDQYNSTIYGLDDRYRGVRNGRRVVFVNPQDCKQRGLKDGDIVDIVSVFDDGERRAPNFRVVEYDTARDC
VTTYFPEANVLVPLDSVAERSNTPVSKSVVVRLEATGRTAS

Specific function: Unknown

COG id: COG0243

COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]

Homologues:

Organism=Escherichia coli, GI1787778, Length=752, Percent_Identity=39.7606382978723, Blast_Score=554, Evalue=1e-159,
Organism=Escherichia coli, GI3868721, Length=388, Percent_Identity=27.8350515463918, Blast_Score=146, Evalue=5e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009010
- InterPro:   IPR006657
- InterPro:   IPR006656
- InterPro:   IPR010046 [H]

Pfam domain/function: PF00384 Molybdopterin; PF01568 Molydop_binding [H]

EC number: 1.2.1.2

Molecular weight: Translated: 84010; Mature: 83878

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTPPTEISNVNPTANEFDDPDVGRRITSAAGVPGVLHALQHAIPNRALLPLLTMNKPGG
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEECCCCC
IDCPGCAWPEPSTANLGVVEFCENGAKAVAEETTPDRAGREFWAEHSIYDLREKTDHWLG
CCCCCCCCCCCCCCCCHHHHHHHCCHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHC
KRGRITEPMFYDRSSGDDHYRPISWDRAFEIIASKLREIEPDEAVFYTSGRAPNEPAYML
CCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHH
QLLARRLGTNNLPDCGNMCHESTGTALGETLGLGKGSVVMEDFYNTDLLISVGQNPGTNH
HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHCCCCCCEEEHHHCCCEEEEEECCCCCCCC
PRALTAFKELKENGGKILALNPMPETGLMKFREPQSVKGALSISDKLADEYLQIRLDGDR
CHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCH
AFFQALNKELIRRGALDHAFLDKFCSGVDETIEHLKSLDDEVLLKGCGLTAAEINKAADM
HHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHH
VEKSDTVVVSWTLGVTQHKNAVYTIREMVNFLLLTGNIGKPGAGTAPLRGHSNVQGDRTM
HHCCCCEEEEEEECCEECCCHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCCCH
GIWEKMPESFLAALENEFGFDVPRKHGFDTVDSLRAMREGKTKFFLSLGGNLVRVSSDTS
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCEEEECCCHH
VVEKGMESNELTVHLSTKPNGSQAWPGEQSLILPVIARTDKDVQKSGVQRVTVEDSAGAV
HHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCHHHHCCCEEEEEECCCCEE
HASTGKRTANKDLNLKSECDIIGTIGKQTFGDAFWQPMIDNYDVVRDHIEATIPGFHDFN
ECCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHH
RRIDNPGGFLLPNGPRERIFNTSNGKAQLTVNETNVIELPKDYLLMNTVRSHDQYNSTIY
HHCCCCCCEECCCCCHHHCEECCCCEEEEEECCCCEEECCHHHHHHHHHHHHHHHCCEEE
GLDDRYRGVRNGRRVVFVNPQDCKQRGLKDGDIVDIVSVFDDGERRAPNFRVVEYDTARD
ECCHHHHHHCCCCEEEEECCHHHHHCCCCCCCCEEHHHHHCCCCCCCCCEEEEEECCHHH
CVTTYFPEANVLVPLDSVAERSNTPVSKSVVVRLEATGRTAS
HHHHHCCCCCEEEECHHHHHCCCCCCCCEEEEEEECCCCCCC
>Mature Secondary Structure 
TTPPTEISNVNPTANEFDDPDVGRRITSAAGVPGVLHALQHAIPNRALLPLLTMNKPGG
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEECCCCC
IDCPGCAWPEPSTANLGVVEFCENGAKAVAEETTPDRAGREFWAEHSIYDLREKTDHWLG
CCCCCCCCCCCCCCCCHHHHHHHCCHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHC
KRGRITEPMFYDRSSGDDHYRPISWDRAFEIIASKLREIEPDEAVFYTSGRAPNEPAYML
CCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHH
QLLARRLGTNNLPDCGNMCHESTGTALGETLGLGKGSVVMEDFYNTDLLISVGQNPGTNH
HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHCCCCCCEEEHHHCCCEEEEEECCCCCCCC
PRALTAFKELKENGGKILALNPMPETGLMKFREPQSVKGALSISDKLADEYLQIRLDGDR
CHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCH
AFFQALNKELIRRGALDHAFLDKFCSGVDETIEHLKSLDDEVLLKGCGLTAAEINKAADM
HHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHH
VEKSDTVVVSWTLGVTQHKNAVYTIREMVNFLLLTGNIGKPGAGTAPLRGHSNVQGDRTM
HHCCCCEEEEEEECCEECCCHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCCCH
GIWEKMPESFLAALENEFGFDVPRKHGFDTVDSLRAMREGKTKFFLSLGGNLVRVSSDTS
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCEEEECCCHH
VVEKGMESNELTVHLSTKPNGSQAWPGEQSLILPVIARTDKDVQKSGVQRVTVEDSAGAV
HHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCHHHHCCCEEEEEECCCCEE
HASTGKRTANKDLNLKSECDIIGTIGKQTFGDAFWQPMIDNYDVVRDHIEATIPGFHDFN
ECCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHH
RRIDNPGGFLLPNGPRERIFNTSNGKAQLTVNETNVIELPKDYLLMNTVRSHDQYNSTIY
HHCCCCCCEECCCCCHHHCEECCCCEEEEEECCCCEEECCHHHHHHHHHHHHHHHCCEEE
GLDDRYRGVRNGRRVVFVNPQDCKQRGLKDGDIVDIVSVFDDGERRAPNFRVVEYDTARD
ECCHHHHHHCCCCEEEEECCHHHHHCCCCCCCCEEHHHHHCCCCCCCCCEEEEEECCHHH
CVTTYFPEANVLVPLDSVAERSNTPVSKSVVVRLEATGRTAS
HHHHHCCCCCEEEECHHHHHCCCCCCCCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: formate; NAD+

Specific reaction: formate + NAD+ = CO2 + NADH

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]