| Definition | Corynebacterium glutamicum R chromosome, complete genome. |
|---|---|
| Accession | NC_009342 |
| Length | 3,314,179 |
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The map label for this gene is yprA [H]
Identifier: 145294438
GI number: 145294438
Start: 424486
End: 426843
Strand: Reverse
Name: yprA [H]
Synonym: cgR_0393
Alternate gene names: 145294438
Gene position: 426843-424486 (Counterclockwise)
Preceding gene: 145294442
Following gene: 145294430
Centisome position: 12.88
GC content: 57.51
Gene sequence:
>2358_bases ATGAGGCCCAGCTTTGGTGAAGAGCTGGCCGCAATCGTTTCCAAACGTTACTCCGAATCGACGCTCACTCATATGGTGAC GTTGCCCGCATCGAAAGCTAAATACGTCGATTGGCCGAGTTGGGTACCTGCTAGCCTGCGCGATGCGTTGGTGAATCGTG GTATCAATAAGCTCTTTTCCCACCAGGAGCAGACCGCACATCTGGCGTGGAATGGCCAGCATGTGGTGGTTGCCACCGGT ACATCTTCGGGAAAATCTTTGGGTTATCAGCTGCCCATTTTGTCAGCGCTCGGCACGGATCCTACCGCCTGTGCGTTGTA TCTAACTCCCACCAAGGCTTTGGGATCTGATCAGCTAACCTCCACGTCCACGTTGCTGCGCGACATTCCGGATTTCCACC CGATCAATCCGGCGCCCTACGACGGCGATACCCCCTCCGAGGCGCGGTCCGGCATCCGCGATCTGAGTCGTTTTGTGTTC ACCAATCCGGATATGGTGCATGCGTCCATGCTGGCGAATCATTCGCGCTGGGCTAGGTTGTTGCGCCATTTGAAGTTCAT CGTGATTGATGAATGCCATGCCTACCGTGGTGTGTTTGGCGCGAACGTGTCGATGGTGCTTCGTCGTCTACTGCGCCTCG CCGCGTTTTATGGATCCCACCCGACGGTCATTTTGGCGTCCGCGACCAGCTCCGATCCGGAAATTCATGCTTCCAGATTG TTGGGCGCGCCGGTTAAAGCAGTGACGGAAGATGGCGCCCCGACGGGTGAACGCACCGTTTTGCTGTGGGAGCCCGGTTT CATCGAAGGCGCCGAGGGCGAGAACGGCGCGCCGGTGCGTCGCGCAGCCAGCACCGAAGCAGCAAACATTATGGCCACGC TCATTTCCGAGGGTGCACGCACGTTGACGTTCGTCCGTTCACGTCGACAAGCAGAAATCGTTGCCCTGCGCGCGCAGGAA GAGCTCAGCACGCTGGGCCGCCCCGATTTCGCCCGGCGCGTCGCGTCCTACCGGGCGGGGTACTTGGCGGAGGACCGCCG TAGGCTGGAAAGATTGCTTGACGACGGCACCCTCCTCGGTGTTGCTTCCACCAATGCGCTTGAACTGGGCATTGATGTCG GTGGACTGGATGCTGTGGTCACGGCTGGTTTTCCAGGAACTGTGGCGTCGTTTTGGCAGCAGGCGGGACGAGCTGGTCGG CGTGGGCAGGGTTCGTTGGTGGTGCTTGTTGCTCGTGATGAGCCGATGGATACGTATTTGGTGCATCATCCGGCGGCCCT GTTGGAGAAGCCGGTTGAGGCTGCGGTGTTTGATCCGACGAATCCGCATGTTATTCGGGGTCATGTTTATTGCGCTGCGG TGGAAAAGCCTCTGACTGAGGTAGAAGTCGCGGCGTTTGGTGCCCAAAAGGTGGTGGAGAAGCTCGAGATTGAAGGGCTG TTGCGCAAGCGTCCGCGTGGCTGGTTTGCGGTGGAAAAGCCCATGTCAGAGGATCCGGATGAGCTTATTCCTGATTCGGC ACACCAGCAGGTGAGTTTGCGTGGTGGGTCTGGTTCGGAGTTCATGATTGTTGATATCAGTGACGGCCGGTTGTTAGGCA CCATCGATTCCGCGAAGGCGATGTCGCAGACTCATCCCGGCGCGGTGTATCTCCACCAGGGTGAATCCTTTGTCATTGAT GAGTTGGATTTGGAGGAGAATCTGGCACTGGCCAGGCCTGAGCTGCCTGATTACACCACTTATGCGAGAAGTGACACGGA CATCAGGATTACTTCTGCCCCGTTGGAGGACGAGGTTTTTGATGCTGGTGGTGGTTTGTGGGTCGCCAACGTAGAGGTGC AGGTCACCGACCGTGTGACTGGCTATGTCACCCGCCTTAGTGATGGCACCACGTTGGATGCGACTCCGTTGTATCTTCCT CCTCAAATTCTTCAGACTCGTGCGGTGGCGTACACGATTGATCCGTTGGCGTTGGAAGCGATGGGCATTCCCGCCGCTGA TATTCCCGGTGCTCTTCACGCAGCGGAGCATGCGGCGATTGGTATGTTGCCGCTGCTTGCGACGTGTGATCGTTGGGATA TCGGCGGCGTATCCACGGCACTTCATGCGGATACGGGCTACCCCACTGTGTTTGTCTATGACGGTATGGACGGCGGAGCT GGTTTTGCGGATACTGGTTTTCGACGTTTCGCCCAGTGGATTGAGGCCACATTTGAGGTCGTCCGCAGCTGTAGCTGTGA ATCTGGGTGCCCGAGCTGTGTGCAGTCCCCGAAATGTGGCAATGGAAACAATCCGTTGGATAAGGCAGGTGCCATCAAGT TACTGGGTGCGATGGTGACCTTGTTGGGAACCTCATAA
Upstream 100 bases:
>100_bases TTAGTTTTACGTTTTGGCAGGTCAGTCCCATTTATACAGCCCAGCGAAAGGGGGTAAATTCTTGACTACCCCCGATTTTG AGAGTGAAAAGACTCAAGCT
Downstream 100 bases:
>100_bases AGGTCCTGCTTTTGCGTGGGCTTCTTGTCCACGAACGGTGACGGTGAGCGTGAGATCCTCCCCTTCTGTTGCGCAGTTTT CGAGTTGTGCGTTGTTTGCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 785; Mature: 785
Protein sequence:
>785_residues MRPSFGEELAAIVSKRYSESTLTHMVTLPASKAKYVDWPSWVPASLRDALVNRGINKLFSHQEQTAHLAWNGQHVVVATG TSSGKSLGYQLPILSALGTDPTACALYLTPTKALGSDQLTSTSTLLRDIPDFHPINPAPYDGDTPSEARSGIRDLSRFVF TNPDMVHASMLANHSRWARLLRHLKFIVIDECHAYRGVFGANVSMVLRRLLRLAAFYGSHPTVILASATSSDPEIHASRL LGAPVKAVTEDGAPTGERTVLLWEPGFIEGAEGENGAPVRRAASTEAANIMATLISEGARTLTFVRSRRQAEIVALRAQE ELSTLGRPDFARRVASYRAGYLAEDRRRLERLLDDGTLLGVASTNALELGIDVGGLDAVVTAGFPGTVASFWQQAGRAGR RGQGSLVVLVARDEPMDTYLVHHPAALLEKPVEAAVFDPTNPHVIRGHVYCAAVEKPLTEVEVAAFGAQKVVEKLEIEGL LRKRPRGWFAVEKPMSEDPDELIPDSAHQQVSLRGGSGSEFMIVDISDGRLLGTIDSAKAMSQTHPGAVYLHQGESFVID ELDLEENLALARPELPDYTTYARSDTDIRITSAPLEDEVFDAGGGLWVANVEVQVTDRVTGYVTRLSDGTTLDATPLYLP PQILQTRAVAYTIDPLALEAMGIPAADIPGALHAAEHAAIGMLPLLATCDRWDIGGVSTALHADTGYPTVFVYDGMDGGA GFADTGFRRFAQWIEATFEVVRSCSCESGCPSCVQSPKCGNGNNPLDKAGAIKLLGAMVTLLGTS
Sequences:
>Translated_785_residues MRPSFGEELAAIVSKRYSESTLTHMVTLPASKAKYVDWPSWVPASLRDALVNRGINKLFSHQEQTAHLAWNGQHVVVATG TSSGKSLGYQLPILSALGTDPTACALYLTPTKALGSDQLTSTSTLLRDIPDFHPINPAPYDGDTPSEARSGIRDLSRFVF TNPDMVHASMLANHSRWARLLRHLKFIVIDECHAYRGVFGANVSMVLRRLLRLAAFYGSHPTVILASATSSDPEIHASRL LGAPVKAVTEDGAPTGERTVLLWEPGFIEGAEGENGAPVRRAASTEAANIMATLISEGARTLTFVRSRRQAEIVALRAQE ELSTLGRPDFARRVASYRAGYLAEDRRRLERLLDDGTLLGVASTNALELGIDVGGLDAVVTAGFPGTVASFWQQAGRAGR RGQGSLVVLVARDEPMDTYLVHHPAALLEKPVEAAVFDPTNPHVIRGHVYCAAVEKPLTEVEVAAFGAQKVVEKLEIEGL LRKRPRGWFAVEKPMSEDPDELIPDSAHQQVSLRGGSGSEFMIVDISDGRLLGTIDSAKAMSQTHPGAVYLHQGESFVID ELDLEENLALARPELPDYTTYARSDTDIRITSAPLEDEVFDAGGGLWVANVEVQVTDRVTGYVTRLSDGTTLDATPLYLP PQILQTRAVAYTIDPLALEAMGIPAADIPGALHAAEHAAIGMLPLLATCDRWDIGGVSTALHADTGYPTVFVYDGMDGGA GFADTGFRRFAQWIEATFEVVRSCSCESGCPSCVQSPKCGNGNNPLDKAGAIKLLGAMVTLLGTS >Mature_785_residues MRPSFGEELAAIVSKRYSESTLTHMVTLPASKAKYVDWPSWVPASLRDALVNRGINKLFSHQEQTAHLAWNGQHVVVATG TSSGKSLGYQLPILSALGTDPTACALYLTPTKALGSDQLTSTSTLLRDIPDFHPINPAPYDGDTPSEARSGIRDLSRFVF TNPDMVHASMLANHSRWARLLRHLKFIVIDECHAYRGVFGANVSMVLRRLLRLAAFYGSHPTVILASATSSDPEIHASRL LGAPVKAVTEDGAPTGERTVLLWEPGFIEGAEGENGAPVRRAASTEAANIMATLISEGARTLTFVRSRRQAEIVALRAQE ELSTLGRPDFARRVASYRAGYLAEDRRRLERLLDDGTLLGVASTNALELGIDVGGLDAVVTAGFPGTVASFWQQAGRAGR RGQGSLVVLVARDEPMDTYLVHHPAALLEKPVEAAVFDPTNPHVIRGHVYCAAVEKPLTEVEVAAFGAQKVVEKLEIEGL LRKRPRGWFAVEKPMSEDPDELIPDSAHQQVSLRGGSGSEFMIVDISDGRLLGTIDSAKAMSQTHPGAVYLHQGESFVID ELDLEENLALARPELPDYTTYARSDTDIRITSAPLEDEVFDAGGGLWVANVEVQVTDRVTGYVTRLSDGTTLDATPLYLP PQILQTRAVAYTIDPLALEAMGIPAADIPGALHAAEHAAIGMLPLLATCDRWDIGGVSTALHADTGYPTVFVYDGMDGGA GFADTGFRRFAQWIEATFEVVRSCSCESGCPSCVQSPKCGNGNNPLDKAGAIKLLGAMVTLLGTS
Specific function: Unknown
COG id: COG1205
COG function: function code R; Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1787942, Length=410, Percent_Identity=27.3170731707317, Blast_Score=80, Evalue=7e-16, Organism=Saccharomyces cerevisiae, GI6320497, Length=797, Percent_Identity=32.4968632371393, Blast_Score=429, Evalue=1e-121,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR018973 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR014021 [H]
Pfam domain/function: PF00270 DEAD; PF09369 DUF1998; PF00271 Helicase_C [H]
EC number: 3.6.1.- [C]
Molecular weight: Translated: 84389; Mature: 84389
Theoretical pI: Translated: 5.33; Mature: 5.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPSFGEELAAIVSKRYSESTLTHMVTLPASKAKYVDWPSWVPASLRDALVNRGINKLFS CCCCHHHHHHHHHHHHCCHHHEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHC HQEQTAHLAWNGQHVVVATGTSSGKSLGYQLPILSALGTDPTACALYLTPTKALGSDQLT CCCCCEEEEECCCEEEEEECCCCCCCCCEECCHHHHHCCCCCEEEEEECCCHHCCCCCCH STSTLLRDIPDFHPINPAPYDGDTPSEARSGIRDLSRFVFTNPDMVHASMLANHSRWARL HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHH LRHLKFIVIDECHAYRGVFGANVSMVLRRLLRLAAFYGSHPTVILASATSSDPEIHASRL HHHHHEEEEECHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH LGAPVKAVTEDGAPTGERTVLLWEPGFIEGAEGENGAPVRRAASTEAANIMATLISEGAR CCCCHHHHCCCCCCCCCEEEEEECCCCEECCCCCCCCCCHHHCCHHHHHHHHHHHHCCCH TLTFVRSRRQAEIVALRAQEELSTLGRPDFARRVASYRAGYLAEDRRRLERLLDDGTLLG HHHHHHHCCCEEEEEEECHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEE VASTNALELGIDVGGLDAVVTAGFPGTVASFWQQAGRAGRRGQGSLVVLVARDEPMDTYL EECCCEEEEECCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCEEE VHHPAALLEKPVEAAVFDPTNPHVIRGHVYCAAVEKPLTEVEVAAFGAQKVVEKLEIEGL EECCHHHHCCCCHHEEECCCCCCEEEEEEEEEEHHCCCHHHHHHHHCHHHHHHHHHHHHH LRKRPRGWFAVEKPMSEDPDELIPDSAHQQVSLRGGSGSEFMIVDISDGRLLGTIDSAKA HHHCCCCCEEECCCCCCCCHHHCCCCCCCEEEEECCCCCEEEEEECCCCEEEEECHHHHH MSQTHPGAVYLHQGESFVIDELDLEENLALARPELPDYTTYARSDTDIRITSAPLEDEVF HHCCCCCEEEEECCCEEEEECCCCCCCCEECCCCCCCCCEECCCCCCEEEECCCCCHHHH DAGGGLWVANVEVQVTDRVTGYVTRLSDGTTLDATPLYLPPQILQTRAVAYTIDPLALEA HCCCCEEEEEEEEEEECCCEEEEEECCCCCEECCCCCCCCHHHHHCCCEEEEECCHHHHC MGIPAADIPGALHAAEHAAIGMLPLLATCDRWDIGGVSTALHADTGYPTVFVYDGMDGGA CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCEEEEECCCCCCC GFADTGFRRFAQWIEATFEVVRSCSCESGCPSCVQSPKCGNGNNPLDKAGAIKLLGAMVT CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH LLGTS HHCCC >Mature Secondary Structure MRPSFGEELAAIVSKRYSESTLTHMVTLPASKAKYVDWPSWVPASLRDALVNRGINKLFS CCCCHHHHHHHHHHHHCCHHHEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHC HQEQTAHLAWNGQHVVVATGTSSGKSLGYQLPILSALGTDPTACALYLTPTKALGSDQLT CCCCCEEEEECCCEEEEEECCCCCCCCCEECCHHHHHCCCCCEEEEEECCCHHCCCCCCH STSTLLRDIPDFHPINPAPYDGDTPSEARSGIRDLSRFVFTNPDMVHASMLANHSRWARL HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHH LRHLKFIVIDECHAYRGVFGANVSMVLRRLLRLAAFYGSHPTVILASATSSDPEIHASRL HHHHHEEEEECHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH LGAPVKAVTEDGAPTGERTVLLWEPGFIEGAEGENGAPVRRAASTEAANIMATLISEGAR CCCCHHHHCCCCCCCCCEEEEEECCCCEECCCCCCCCCCHHHCCHHHHHHHHHHHHCCCH TLTFVRSRRQAEIVALRAQEELSTLGRPDFARRVASYRAGYLAEDRRRLERLLDDGTLLG HHHHHHHCCCEEEEEEECHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEE VASTNALELGIDVGGLDAVVTAGFPGTVASFWQQAGRAGRRGQGSLVVLVARDEPMDTYL EECCCEEEEECCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCEEE VHHPAALLEKPVEAAVFDPTNPHVIRGHVYCAAVEKPLTEVEVAAFGAQKVVEKLEIEGL EECCHHHHCCCCHHEEECCCCCCEEEEEEEEEEHHCCCHHHHHHHHCHHHHHHHHHHHHH LRKRPRGWFAVEKPMSEDPDELIPDSAHQQVSLRGGSGSEFMIVDISDGRLLGTIDSAKA HHHCCCCCEEECCCCCCCCHHHCCCCCCCEEEEECCCCCEEEEEECCCCEEEEECHHHHH MSQTHPGAVYLHQGESFVIDELDLEENLALARPELPDYTTYARSDTDIRITSAPLEDEVF HHCCCCCEEEEECCCEEEEECCCCCCCCEECCCCCCCCCEECCCCCCEEEECCCCCHHHH DAGGGLWVANVEVQVTDRVTGYVTRLSDGTTLDATPLYLPPQILQTRAVAYTIDPLALEA HCCCCEEEEEEEEEEECCCEEEEEECCCCCEECCCCCCCCHHHHHCCCEEEEECCHHHHC MGIPAADIPGALHAAEHAAIGMLPLLATCDRWDIGGVSTALHADTGYPTVFVYDGMDGGA CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCEEEEECCCCCCC GFADTGFRRFAQWIEATFEVVRSCSCESGCPSCVQSPKCGNGNNPLDKAGAIKLLGAMVT CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH LLGTS HHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on acid anhydrides [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8760912; 9384377 [H]