| Definition | Corynebacterium glutamicum R chromosome, complete genome. |
|---|---|
| Accession | NC_009342 |
| Length | 3,314,179 |
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The map label for this gene is pbpG [H]
Identifier: 145294410
GI number: 145294410
Start: 399143
End: 401530
Strand: Reverse
Name: pbpG [H]
Synonym: cgR_0365
Alternate gene names: 145294410
Gene position: 401530-399143 (Counterclockwise)
Preceding gene: 145294414
Following gene: 145294408
Centisome position: 12.12
GC content: 55.53
Gene sequence:
>2388_bases GTGTCCACCACGAATTCTCTGACAAAGCTCGTTGCATCTACAGTCGCCGCTGGCGTCCTTGGTGCGCTCGCACTTGTGCC TTTCGCTAGTCTTTCTGGCGTTGCGGTTGCGCGTACCAATGACACGATGCAGACCAACCTTTCAGATCTGACGGATGGTC GCGGGCCGGGCGTCACGACGATTACTGATTCCACTGACCAGCCGATTGCTTATATTTATGCGCAGCGGCGGTTTGAGGTT GGGGGTGATCAGATTTCTACGTCGATGAAGGATGCGATCGTTTCGATTGAGGATCGCAGGTTCTATGAGCATGATGGTGT GGATTTGCAGGGCTTTGGTCGTGCAATCCTGACGAACCTGGTTGCGGGTGGCGTGGAGCAGGGTGCTTCGACGATTAACC AGCAGTATGTGAAGAACTTCTTGCTGTTGGTGGAAGCTGATGATGAGGCGGAGCAGGCTGCTGCTGTGGAAACCTCCATC CCGCGTAAGCTCCGTGAGATGAAGATGGCGTCTGATTTGGAAAAGACGTTGTCGAAGGATGAGATTCTGACTCGTTATCT CAACATTGTTCCTTTTGGTAATGGTGCTTATGGTGTTGAGGCTGCGGCGCGGACGTATTTCGGTACGTCGGCTGCCGAGT TAACCATTCCACAGTCTGCGATGCTCGCGGGCATTGTGCAGTCTTCGTCTTATCTCAATCCATACACCAATCACGATGCT GTGTTTGAGCGTCGTAATACTGTTTTGGGCGCTATGGCTGATGCTGGCGCGATTTCCCCAGAGGAGGCTTCGGCTTTCCA GCAGGAACCTTTGGGTGTCCTGGAAACCCCGCAAGGCTTATCCAATGGTTGTATCGGCGCTGGCGATCGTGGTTTCTTCT GCGATTACGCTCTGCAATATCTTTCTGAGCAGGGAATCACCCAAGATATGCTGGCGAAGGATTCCTACACCATCAAATTG ACTTTGGATCCAGATGTTCAGGATGCAGCGCACAATGCGGTGTCCTCCCACGTTGATCCAACCACTCCAGGTGTCGCTGA AGTTGTGAACGTCATTGAGCCTGGCGAGAACTCCCGCGATATTTTGGCTATTACTTCTTCCCGCAACTACGGCCTTGACC TGGATGCTGGTGAAACGATGCTGCCTCAGGCAACGTCCCGTGTGGGTAATGGTGCCGGTTCCATTTTCAAGATCTTTACC GCCGCTGCAGCCATTCAGCAGGGCGCTGGCCTAGACACCATGTTGGATGTTCCTTCTCGATATGAGGTCAAGGGCATGGG CTCCGGCGGTGCCGCGAACTGTCCCGCAAATACTTACTGCGTGGAAAACGCAGGATCCTACGCGCCTCGCATGACTCTGC AGGACGCTCTCGCGCAATCCCCCAACACTGCATTCGTTGAAATGATCGAGCAGGTTGGCGTGGACACCGTTGTGGATCTT TCAGTAAAGCTGGGCCTGCGAAGCTACACCGATGAAGGTTCCTTCGACGGCGAAAGCTCAATCGCGGACTACATGAAGGA CAACAACCTCGGTTCTTACACTCTTGGACCTACCGCTGTTAACCCTCTTGAATTGTCCAATGTTGCTGCAACCATTGCGT CCGGTGGCATGTGGTGCGAACCCAACCCCATCGCCAGCGTCCATGACCGTGAAGGCAACGAAGTCTACATTGACCGCCCT GCATGTGAGCGCGCCATCGATGCCGAAACGGCTTCAGCTTTGGCCGTCGGCATGAGCAAGGATACGGTCAGCGGAACTGC GGCCTCTGCAGCCAGCATGTACGGATGGTCCTTGCCAACCGCAGCGAAGACCGGTACCACCGAGTCCAACCAGTCCTCAT CATTTATGGGCTTCAACAGCAACTTTGCCGCAGCTCCATACATCTACAATGACGGCACCTCCACCACCCCACTGTGCAGC GGCCCCGTCCGCCAGTGCAGCAGCGGTAACCTCTTCGGCGGTAACGAACCAGCTCAAACATGGTTTAACATGGCAAGCAA CGTCCCCGCAGCTTCGCAAGGAACACTGCCATCCAGCAGCGATTCATTCCGCCTCGGCACTTCAGGCGAACTCCTCAACC AGGTTGTCGGCCAAAGCGAAGCCTCCGCTCGACGCACCCTCGAAGCCAAAGGCTACAAGGTGACCACGCGTTCAGTCTCC GGCGCCGGCAGCGCGCGCGGCACCGTGGTCAGCGCAACCCCTCAGGGTGCAGTGCTTATCGACGGTGGAACCGTCATTTT GAACATCTCCGACGGCACAAGCCCTGCCCCCGCTGCCACCAACAATGATGACAGCGACGATGGAGACACCCCTGCTCCAT CAACAAACAACCGCGGAACAACCATTGAAGACGCCATCAATGACGCCATCAACCAGTTCTTCCGCTAG
Upstream 100 bases:
>100_bases CCGACTGTCAGCAGTAACGCACAGTCGAATAAATAAAGATTGGCTGACATTGTTGGAGTCTTGGGTTCACGATTCCCGGG GTTATCGCTAGGCTGTTGGA
Downstream 100 bases:
>100_bases AAATACCTAGTTGCTCAAACGGCTCTTCACTGCGGTGGAGAGCCGTTTTCCATCTGCACGGCCAGCAGCCTTAGCGGTAG CAGCCTTCATGATCTGGCCC
Product: hypothetical protein
Products: NA
Alternate protein names: PBP-2D; PBP2d [H]
Number of amino acids: Translated: 795; Mature: 794
Protein sequence:
>795_residues MSTTNSLTKLVASTVAAGVLGALALVPFASLSGVAVARTNDTMQTNLSDLTDGRGPGVTTITDSTDQPIAYIYAQRRFEV GGDQISTSMKDAIVSIEDRRFYEHDGVDLQGFGRAILTNLVAGGVEQGASTINQQYVKNFLLLVEADDEAEQAAAVETSI PRKLREMKMASDLEKTLSKDEILTRYLNIVPFGNGAYGVEAAARTYFGTSAAELTIPQSAMLAGIVQSSSYLNPYTNHDA VFERRNTVLGAMADAGAISPEEASAFQQEPLGVLETPQGLSNGCIGAGDRGFFCDYALQYLSEQGITQDMLAKDSYTIKL TLDPDVQDAAHNAVSSHVDPTTPGVAEVVNVIEPGENSRDILAITSSRNYGLDLDAGETMLPQATSRVGNGAGSIFKIFT AAAAIQQGAGLDTMLDVPSRYEVKGMGSGGAANCPANTYCVENAGSYAPRMTLQDALAQSPNTAFVEMIEQVGVDTVVDL SVKLGLRSYTDEGSFDGESSIADYMKDNNLGSYTLGPTAVNPLELSNVAATIASGGMWCEPNPIASVHDREGNEVYIDRP ACERAIDAETASALAVGMSKDTVSGTAASAASMYGWSLPTAAKTGTTESNQSSSFMGFNSNFAAAPYIYNDGTSTTPLCS GPVRQCSSGNLFGGNEPAQTWFNMASNVPAASQGTLPSSSDSFRLGTSGELLNQVVGQSEASARRTLEAKGYKVTTRSVS GAGSARGTVVSATPQGAVLIDGGTVILNISDGTSPAPAATNNDDSDDGDTPAPSTNNRGTTIEDAINDAINQFFR
Sequences:
>Translated_795_residues MSTTNSLTKLVASTVAAGVLGALALVPFASLSGVAVARTNDTMQTNLSDLTDGRGPGVTTITDSTDQPIAYIYAQRRFEV GGDQISTSMKDAIVSIEDRRFYEHDGVDLQGFGRAILTNLVAGGVEQGASTINQQYVKNFLLLVEADDEAEQAAAVETSI PRKLREMKMASDLEKTLSKDEILTRYLNIVPFGNGAYGVEAAARTYFGTSAAELTIPQSAMLAGIVQSSSYLNPYTNHDA VFERRNTVLGAMADAGAISPEEASAFQQEPLGVLETPQGLSNGCIGAGDRGFFCDYALQYLSEQGITQDMLAKDSYTIKL TLDPDVQDAAHNAVSSHVDPTTPGVAEVVNVIEPGENSRDILAITSSRNYGLDLDAGETMLPQATSRVGNGAGSIFKIFT AAAAIQQGAGLDTMLDVPSRYEVKGMGSGGAANCPANTYCVENAGSYAPRMTLQDALAQSPNTAFVEMIEQVGVDTVVDL SVKLGLRSYTDEGSFDGESSIADYMKDNNLGSYTLGPTAVNPLELSNVAATIASGGMWCEPNPIASVHDREGNEVYIDRP ACERAIDAETASALAVGMSKDTVSGTAASAASMYGWSLPTAAKTGTTESNQSSSFMGFNSNFAAAPYIYNDGTSTTPLCS GPVRQCSSGNLFGGNEPAQTWFNMASNVPAASQGTLPSSSDSFRLGTSGELLNQVVGQSEASARRTLEAKGYKVTTRSVS GAGSARGTVVSATPQGAVLIDGGTVILNISDGTSPAPAATNNDDSDDGDTPAPSTNNRGTTIEDAINDAINQFFR >Mature_794_residues STTNSLTKLVASTVAAGVLGALALVPFASLSGVAVARTNDTMQTNLSDLTDGRGPGVTTITDSTDQPIAYIYAQRRFEVG GDQISTSMKDAIVSIEDRRFYEHDGVDLQGFGRAILTNLVAGGVEQGASTINQQYVKNFLLLVEADDEAEQAAAVETSIP RKLREMKMASDLEKTLSKDEILTRYLNIVPFGNGAYGVEAAARTYFGTSAAELTIPQSAMLAGIVQSSSYLNPYTNHDAV FERRNTVLGAMADAGAISPEEASAFQQEPLGVLETPQGLSNGCIGAGDRGFFCDYALQYLSEQGITQDMLAKDSYTIKLT LDPDVQDAAHNAVSSHVDPTTPGVAEVVNVIEPGENSRDILAITSSRNYGLDLDAGETMLPQATSRVGNGAGSIFKIFTA AAAIQQGAGLDTMLDVPSRYEVKGMGSGGAANCPANTYCVENAGSYAPRMTLQDALAQSPNTAFVEMIEQVGVDTVVDLS VKLGLRSYTDEGSFDGESSIADYMKDNNLGSYTLGPTAVNPLELSNVAATIASGGMWCEPNPIASVHDREGNEVYIDRPA CERAIDAETASALAVGMSKDTVSGTAASAASMYGWSLPTAAKTGTTESNQSSSFMGFNSNFAAAPYIYNDGTSTTPLCSG PVRQCSSGNLFGGNEPAQTWFNMASNVPAASQGTLPSSSDSFRLGTSGELLNQVVGQSEASARRTLEAKGYKVTTRSVSG AGSARGTVVSATPQGAVLIDGGTVILNISDGTSPAPAATNNDDSDDGDTPAPSTNNRGTTIEDAINDAINQFFR
Specific function: Involved in the polymerization and cross-linking of spore peptidoglycan. May be required for synthesis of the spore germ cell wall, the first layer of peptidoglycan synthesized on the surface of the inner forespore membrane [H]
COG id: COG0744
COG function: function code M; Membrane carboxypeptidase (penicillin-binding protein)
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI87082258, Length=301, Percent_Identity=34.8837209302326, Blast_Score=151, Evalue=2e-37, Organism=Escherichia coli, GI1786343, Length=565, Percent_Identity=29.2035398230088, Blast_Score=148, Evalue=1e-36, Organism=Escherichia coli, GI1788867, Length=197, Percent_Identity=33.502538071066, Blast_Score=102, Evalue=9e-23, Organism=Escherichia coli, GI1789601, Length=178, Percent_Identity=35.3932584269663, Blast_Score=90, Evalue=6e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.2.-; 3.4.-.- [C]
Molecular weight: Translated: 83011; Mature: 82880
Theoretical pI: Translated: 4.13; Mature: 4.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTTNSLTKLVASTVAAGVLGALALVPFASLSGVAVARTNDTMQTNLSDLTDGRGPGVTT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHCHHHHCCCCCCCEEE ITDSTDQPIAYIYAQRRFEVGGDQISTSMKDAIVSIEDRRFYEHDGVDLQGFGRAILTNL EECCCCCCEEEEEEHHHHCCCCHHHHHHHHHHHEEECCCEEHHCCCCCHHHHHHHHHHHH VAGGVEQGASTINQQYVKNFLLLVEADDEAEQAAAVETSIPRKLREMKMASDLEKTLSKD HHCCHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EILTRYLNIVPFGNGAYGVEAAARTYFGTSAAELTIPQSAMLAGIVQSSSYLNPYTNHDA HHHHHHHHHEECCCCCCCHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCCCCCCCCCHH VFERRNTVLGAMADAGAISPEEASAFQQEPLGVLETPQGLSNGCIGAGDRGFFCDYALQY HHHHHHHHHEEHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH LSEQGITQDMLAKDSYTIKLTLDPDVQDAAHNAVSSHVDPTTPGVAEVVNVIEPGENSRD HHHCCCCHHHHCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCE ILAITSSRNYGLDLDAGETMLPQATSRVGNGAGSIFKIFTAAAAIQQGAGLDTMLDVPSR EEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCC YEVKGMGSGGAANCPANTYCVENAGSYAPRMTLQDALAQSPNTAFVEMIEQVGVDTVVDL EEEEECCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCEEEEH SVKLGLRSYTDEGSFDGESSIADYMKDNNLGSYTLGPTAVNPLELSNVAATIASGGMWCE HHHHCCHHCCCCCCCCCHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHHHHCCCEECC PNPIASVHDREGNEVYIDRPACERAIDAETASALAVGMSKDTVSGTAASAASMYGWSLPT CCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHCCCCCCC AAKTGTTESNQSSSFMGFNSNFAAAPYIYNDGTSTTPLCSGPVRQCSSGNLFGGNEPAQT CCCCCCCCCCCCCCEECCCCCCEECCEEECCCCCCCCCCCCHHHHCCCCCCCCCCCHHHH WFNMASNVPAASQGTLPSSSDSFRLGTSGELLNQVVGQSEASARRTLEAKGYKVTTRSVS HHHHHHCCCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCHHHHHHHHHCCCEEEEEEECC GAGSARGTVVSATPQGAVLIDGGTVILNISDGTSPAPAATNNDDSDDGDTPAPSTNNRGT CCCCCCCEEEEECCCCEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TIEDAINDAINQFFR CHHHHHHHHHHHHCC >Mature Secondary Structure STTNSLTKLVASTVAAGVLGALALVPFASLSGVAVARTNDTMQTNLSDLTDGRGPGVTT CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHCHHHHCCCCCCCEEE ITDSTDQPIAYIYAQRRFEVGGDQISTSMKDAIVSIEDRRFYEHDGVDLQGFGRAILTNL EECCCCCCEEEEEEHHHHCCCCHHHHHHHHHHHEEECCCEEHHCCCCCHHHHHHHHHHHH VAGGVEQGASTINQQYVKNFLLLVEADDEAEQAAAVETSIPRKLREMKMASDLEKTLSKD HHCCHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EILTRYLNIVPFGNGAYGVEAAARTYFGTSAAELTIPQSAMLAGIVQSSSYLNPYTNHDA HHHHHHHHHEECCCCCCCHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCCCCCCCCCHH VFERRNTVLGAMADAGAISPEEASAFQQEPLGVLETPQGLSNGCIGAGDRGFFCDYALQY HHHHHHHHHEEHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH LSEQGITQDMLAKDSYTIKLTLDPDVQDAAHNAVSSHVDPTTPGVAEVVNVIEPGENSRD HHHCCCCHHHHCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCE ILAITSSRNYGLDLDAGETMLPQATSRVGNGAGSIFKIFTAAAAIQQGAGLDTMLDVPSR EEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCC YEVKGMGSGGAANCPANTYCVENAGSYAPRMTLQDALAQSPNTAFVEMIEQVGVDTVVDL EEEEECCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCEEEEH SVKLGLRSYTDEGSFDGESSIADYMKDNNLGSYTLGPTAVNPLELSNVAATIASGGMWCE HHHHCCHHCCCCCCCCCHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHHHHCCCEECC PNPIASVHDREGNEVYIDRPACERAIDAETASALAVGMSKDTVSGTAASAASMYGWSLPT CCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHCCCCCCC AAKTGTTESNQSSSFMGFNSNFAAAPYIYNDGTSTTPLCSGPVRQCSSGNLFGGNEPAQT CCCCCCCCCCCCCCEECCCCCCEECCEEECCCCCCCCCCCCHHHHCCCCCCCCCCCHHHH WFNMASNVPAASQGTLPSSSDSFRLGTSGELLNQVVGQSEASARRTLEAKGYKVTTRSVS HHHHHHCCCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCHHHHHHHHHCCCEEEEEEECC GAGSARGTVVSATPQGAVLIDGGTVILNISDGTSPAPAATNNDDSDDGDTPAPSTNNRGT CCCCCCCEEEEECCCCEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TIEDAINDAINQFFR CHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9353933; 9384377 [H]