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The map label for this gene is rbsR [H]

Identifier: 145294293

GI number: 145294293

Start: 268703

End: 269701

Strand: Reverse

Name: rbsR [H]

Synonym: cgR_0249

Alternate gene names: 145294293

Gene position: 269701-268703 (Counterclockwise)

Preceding gene: 145294303

Following gene: 145294280

Centisome position: 8.14

GC content: 56.86

Gene sequence:

>999_bases
ATGAGCACATCCCGCCCCACAATTTATGACGTCGCCAAAGCCGCAGGCGTCTCCAAATCACTAGTTTCTCTCGTGCTTCG
CGGCTCCACCAACGTGAGCAAAGAATCCGAAGCCGCGGTCAAGACCGCGATAAAAAAGCTCAACTACCAGCCAAATCGCG
CCGCATCAGACCTTGCGGCCAAGCGCACGCAGCTCATTGCAGTGCTTATCGACGACTACTCCAACCCGTGGTTCATCGAC
CTGATTCAAAGCCTCAGCGATGTGCTCACCCCCAAGGGGTACCGACTGTCCGTCATTGACTCATTAACCTCTCAAGCCGG
CACCGATCCCATTACCAGTGCACTATCAATGCGCCCCGATGGAATCATCATCGCCCAAGACATCCCCGATTTCACTGTCC
CCGATTCCCTACCCCCATTTGTCATCGCAGGCACCAGAATCACCCAAGCCAGCACCCATTATTCAGTGGCCAACGATGAC
TTCCGGGGCGCAGAAATAGCCACAAAACACCTCATCGATCTTGGACACACCCACATCGCCCACCTACGCGTGGGAAGCGG
CGCTGGCTTACGACGCTTCGAAAGCTTTGAGGAAACCATGCGTGCACATGGCCTGGAGCCGCTTTCCAACGATTACCTCG
GCCCCGCCGTTGAGCACGCCGGGTACACCGAAACCCTCGCACTACTCAAAGAGCACCCTGAGGTCACCGCCATTTTCTCC
TCAAACGACATCACCGCCATCGGAGCACTCGGTGCCGCCCGTGAACTAGGTTTACGCGTACCTGAAGATCTATCAATAAT
CGGATATGACAACACTCCCCTCGCCCAAACCCGACTGATCAACCTCACCACCATCGACGACAACAGCATCGGCGTCGGCT
ACAACGCCGCTCTCTTGTTGCTGAGCATGCTTGATCCCGAGGCACCCCACCCGGAGATCATGCATACGTTGCAGCCCTCG
CTGATTGAACGGGGCACGTGCGCGCCACGTGGAGGATAG

Upstream 100 bases:

>100_bases
GTGGATCCGGTATTGTGATCCACTACGCAATTGGAGCGCTCCAACACAAGCTATATTTGTTTAAATGTCCTGTCAATAGT
TCAAGAGAAAATCGCAGAAA

Downstream 100 bases:

>100_bases
CTACCCCAAATACTTGGACTTCCTAAAGAGGGATTACTTCGTCTCATTAGGATGATGGGTATGGACCTGCTCGAGGAACA
CAGTGTTCTTCTCAACATAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 331

Protein sequence:

>332_residues
MSTSRPTIYDVAKAAGVSKSLVSLVLRGSTNVSKESEAAVKTAIKKLNYQPNRAASDLAAKRTQLIAVLIDDYSNPWFID
LIQSLSDVLTPKGYRLSVIDSLTSQAGTDPITSALSMRPDGIIIAQDIPDFTVPDSLPPFVIAGTRITQASTHYSVANDD
FRGAEIATKHLIDLGHTHIAHLRVGSGAGLRRFESFEETMRAHGLEPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIFS
SNDITAIGALGAARELGLRVPEDLSIIGYDNTPLAQTRLINLTTIDDNSIGVGYNAALLLLSMLDPEAPHPEIMHTLQPS
LIERGTCAPRGG

Sequences:

>Translated_332_residues
MSTSRPTIYDVAKAAGVSKSLVSLVLRGSTNVSKESEAAVKTAIKKLNYQPNRAASDLAAKRTQLIAVLIDDYSNPWFID
LIQSLSDVLTPKGYRLSVIDSLTSQAGTDPITSALSMRPDGIIIAQDIPDFTVPDSLPPFVIAGTRITQASTHYSVANDD
FRGAEIATKHLIDLGHTHIAHLRVGSGAGLRRFESFEETMRAHGLEPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIFS
SNDITAIGALGAARELGLRVPEDLSIIGYDNTPLAQTRLINLTTIDDNSIGVGYNAALLLLSMLDPEAPHPEIMHTLQPS
LIERGTCAPRGG
>Mature_331_residues
STSRPTIYDVAKAAGVSKSLVSLVLRGSTNVSKESEAAVKTAIKKLNYQPNRAASDLAAKRTQLIAVLIDDYSNPWFIDL
IQSLSDVLTPKGYRLSVIDSLTSQAGTDPITSALSMRPDGIIIAQDIPDFTVPDSLPPFVIAGTRITQASTHYSVANDDF
RGAEIATKHLIDLGHTHIAHLRVGSGAGLRRFESFEETMRAHGLEPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIFSS
NDITAIGALGAARELGLRVPEDLSIIGYDNTPLAQTRLINLTTIDDNSIGVGYNAALLLLSMLDPEAPHPEIMHTLQPSL
IERGTCAPRGG

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787948, Length=333, Percent_Identity=30.9309309309309, Blast_Score=125, Evalue=5e-30,
Organism=Escherichia coli, GI1789202, Length=327, Percent_Identity=29.9694189602446, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1788474, Length=340, Percent_Identity=28.8235294117647, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1789068, Length=286, Percent_Identity=30.7692307692308, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1790194, Length=329, Percent_Identity=28.5714285714286, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI48994940, Length=344, Percent_Identity=27.906976744186, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1786540, Length=335, Percent_Identity=28.3582089552239, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1790369, Length=312, Percent_Identity=28.8461538461538, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787580, Length=288, Percent_Identity=28.125, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1790715, Length=308, Percent_Identity=24.6753246753247, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1787906, Length=279, Percent_Identity=30.1075268817204, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1790689, Length=307, Percent_Identity=25.0814332247557, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790192, Length=221, Percent_Identity=25.3393665158371, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 35586; Mature: 35455

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTSRPTIYDVAKAAGVSKSLVSLVLRGSTNVSKESEAAVKTAIKKLNYQPNRAASDLAA
CCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
KRTQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVIDSLTSQAGTDPITSALSMRPD
HHHHEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCHHHHHHHCCCC
GIIIAQDIPDFTVPDSLPPFVIAGTRITQASTHYSVANDDFRGAEIATKHLIDLGHTHIA
CEEEECCCCCCCCCCCCCCEEEECCEEEECCCCEEECCCCCCCHHHHHHHHHHCCCCEEE
HLRVGSGAGLRRFESFEETMRAHGLEPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIFS
EEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHCCCCEEEEEC
SNDITAIGALGAARELGLRVPEDLSIIGYDNTPLAQTRLINLTTIDDNSIGVGYNAALLL
CCCEEEEHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEEEEEEECCCCCCCCHHHHHHH
LSMLDPEAPHPEIMHTLQPSLIERGTCAPRGG
HHHHCCCCCCHHHHHHHCHHHHHCCCCCCCCC
>Mature Secondary Structure 
STSRPTIYDVAKAAGVSKSLVSLVLRGSTNVSKESEAAVKTAIKKLNYQPNRAASDLAA
CCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
KRTQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVIDSLTSQAGTDPITSALSMRPD
HHHHEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCHHHHHHHCCCC
GIIIAQDIPDFTVPDSLPPFVIAGTRITQASTHYSVANDDFRGAEIATKHLIDLGHTHIA
CEEEECCCCCCCCCCCCCCEEEECCEEEECCCCEEECCCCCCCHHHHHHHHHHCCCCEEE
HLRVGSGAGLRRFESFEETMRAHGLEPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIFS
EEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHCCCCEEEEEC
SNDITAIGALGAARELGLRVPEDLSIIGYDNTPLAQTRLINLTTIDDNSIGVGYNAALLL
CCCEEEEHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEEEEEEECCCCCCCCHHHHHHH
LSMLDPEAPHPEIMHTLQPSLIERGTCAPRGG
HHHHCCCCCCHHHHHHHCHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]