Click here to switch to the map view.

The map label for this gene is nlpD [C]

Identifier: 145294183

GI number: 145294183

Start: 156873

End: 157622

Strand: Reverse

Name: nlpD [C]

Synonym: cgR_0140

Alternate gene names: 145294183

Gene position: 157622-156873 (Counterclockwise)

Preceding gene: 145294184

Following gene: 145294182

Centisome position: 4.76

GC content: 63.87

Gene sequence:

>750_bases
ATGCGGACCACGACTCGACAGTCGACCCCAGGTAGACACCGCAAGATCACCGCCTCGCCGACCCGGAAGGGGCGCATCGC
ACTTGTGGCCGTGGCCGCTGGCACGATTTCCTCCGCCGGAGCTGGAGGAGCGGCCGCAGCCACGCTGCAGACACCGGATG
AGACCCCCGCATCTGCTGAGTCCACCGTGGGCGACATTGAGCTGGCCACCAGCGATACTGCACTTTCCTCAAGCGCAGTA
GAGCTTGTCCCGCAGATTCTGACGATCGCCGAGTACAAGCCGGTCGACAATCTCGATGAACAGCTGATTAAGGCCGTCGA
ATACAACAACGAGCGGGCCGAGGCAGAGCAGGCCGCCCGCGCCCCTTCAGTAGTCAAGCCCACCGAAGGCACCTTCACCT
CCGGTTACGGTGTGCGCTGGGGCAGCGTCCATAAGGGCCTGGATGTCGCCAACGTCGTCGGCACCCCGATCCTGGCTGCA
ATGGGCGGCACCGTGATCGATTCTGGCCCCGCCTCCGGTTTCGGCCAGTGGATCCGCATCCAACACGATGATGGTTCGAT
CGCCGTCTACGGGCACATGGAGACCCTTGATGTCACCGTCGGTGAGCAGGTCACCGCGGGCCAGAAGATCGCGGGCATGG
GCAACCGTGGTTTTTCCACTGGATCCCACCTCCACTTCGAGCTCTACCCGGCTGGGAGCGATGCCGTCGACCCGGCACCC
TGGTTCGCCGAGCACGGCATCACCTTCTAA

Upstream 100 bases:

>100_bases
TACCTTCCGCAGGTAACAGAAAGATCACGATATCGTCTCCGATGGGTATACCGTCGTGATTGTTTGTGATGAAAAGATAA
ACACCACGGAAAGAAGTTCA

Downstream 100 bases:

>100_bases
TTCCTCACCCACCTGGGTTCAGGTTCCAGCCCACCACCTGTCCCGTGGTCACCTTTCCTACGAGGATGATGGCCCCGATA
AGTTCGAACGGCTCCACGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MRTTTRQSTPGRHRKITASPTRKGRIALVAVAAGTISSAGAGGAAAATLQTPDETPASAESTVGDIELATSDTALSSSAV
ELVPQILTIAEYKPVDNLDEQLIKAVEYNNERAEAEQAARAPSVVKPTEGTFTSGYGVRWGSVHKGLDVANVVGTPILAA
MGGTVIDSGPASGFGQWIRIQHDDGSIAVYGHMETLDVTVGEQVTAGQKIAGMGNRGFSTGSHLHFELYPAGSDAVDPAP
WFAEHGITF

Sequences:

>Translated_249_residues
MRTTTRQSTPGRHRKITASPTRKGRIALVAVAAGTISSAGAGGAAAATLQTPDETPASAESTVGDIELATSDTALSSSAV
ELVPQILTIAEYKPVDNLDEQLIKAVEYNNERAEAEQAARAPSVVKPTEGTFTSGYGVRWGSVHKGLDVANVVGTPILAA
MGGTVIDSGPASGFGQWIRIQHDDGSIAVYGHMETLDVTVGEQVTAGQKIAGMGNRGFSTGSHLHFELYPAGSDAVDPAP
WFAEHGITF
>Mature_249_residues
MRTTTRQSTPGRHRKITASPTRKGRIALVAVAAGTISSAGAGGAAAATLQTPDETPASAESTVGDIELATSDTALSSSAV
ELVPQILTIAEYKPVDNLDEQLIKAVEYNNERAEAEQAARAPSVVKPTEGTFTSGYGVRWGSVHKGLDVANVVGTPILAA
MGGTVIDSGPASGFGQWIRIQHDDGSIAVYGHMETLDVTVGEQVTAGQKIAGMGNRGFSTGSHLHFELYPAGSDAVDPAP
WFAEHGITF

Specific function: May Be Involved In Stationary-Phase Survival. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=120, Percent_Identity=37.5, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87082174, Length=105, Percent_Identity=39.0476190476191, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI87082297, Length=122, Percent_Identity=33.6065573770492, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI87081989, Length=95, Percent_Identity=35.7894736842105, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 25813; Mature: 25813

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTTTRQSTPGRHRKITASPTRKGRIALVAVAAGTISSAGAGGAAAATLQTPDETPASAE
CCCCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCC
STVGDIELATSDTALSSSAVELVPQILTIAEYKPVDNLDEQLIKAVEYNNERAEAEQAAR
CCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHC
APSVVKPTEGTFTSGYGVRWGSVHKGLDVANVVGTPILAAMGGTVIDSGPASGFGQWIRI
CCCCCCCCCCCCCCCCCEEECCHHCCCCHHHHHCCHHHHHHCCEEEECCCCCCCCEEEEE
QHDDGSIAVYGHMETLDVTVGEQVTAGQKIAGMGNRGFSTGSHLHFELYPAGSDAVDPAP
EECCCCEEEEEECEEEEEECCCCCCCCCEEECCCCCCCCCCCEEEEEEEECCCCCCCCCC
WFAEHGITF
HHHHCCCCC
>Mature Secondary Structure
MRTTTRQSTPGRHRKITASPTRKGRIALVAVAAGTISSAGAGGAAAATLQTPDETPASAE
CCCCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCC
STVGDIELATSDTALSSSAVELVPQILTIAEYKPVDNLDEQLIKAVEYNNERAEAEQAAR
CCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHC
APSVVKPTEGTFTSGYGVRWGSVHKGLDVANVVGTPILAAMGGTVIDSGPASGFGQWIRI
CCCCCCCCCCCCCCCCCEEECCHHCCCCHHHHHCCHHHHHHCCEEEECCCCCCCCEEEEE
QHDDGSIAVYGHMETLDVTVGEQVTAGQKIAGMGNRGFSTGSHLHFELYPAGSDAVDPAP
EECCCCEEEEEECEEEEEECCCCCCCCCEEECCCCCCCCCCCEEEEEEEECCCCCCCCCC
WFAEHGITF
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]