Click here to switch to the map view.

The map label for this gene is rbsC [H]

Identifier: 145294087

GI number: 145294087

Start: 52110

End: 53135

Strand: Direct

Name: rbsC [H]

Synonym: cgR_0045

Alternate gene names: 145294087

Gene position: 52110-53135 (Clockwise)

Preceding gene: 145294086

Following gene: 145294088

Centisome position: 1.57

GC content: 53.7

Gene sequence:

>1026_bases
ATGACGAAAATCAAGAGTGGGGAGGCGTCGACAAGCATTGTTGAGCGCGCCTTAAAGCGCCCCGAGCTGACCAGCCTGCT
TGGCGCCGTGCTTGTTTTTACCCTGTTTATGGTGGTCGCGCCGGCATTTAGATCATGGGATTCTATGGCGACCGTGCTGT
ATGCGAGTTCCACGATCGGCATCATGGCGGTGGCCGTGGGCCTGCTGATGATTGCTGATGAATTCGACCTGTCCACCGGC
GTTGCCGTGACAACTGCAGCGCTGGCGGCCTCGATGTTTAGCTACAATCTGTGGCTGAACACCTGGGTGGGCGCGCTGAT
TGCATTGGTAATTTCGCTGGCCATCGGCTTTTTCAATGGCTTTTTGGTGGTGAAAACCAAGATTGCATCCTTCCTGATCA
CCCTTGCCACTTTCCTTATGCTGCAGGGTATTAATCTGGCGGTCACCAAGCTGATTTCCGGTACTGTGGCCACGCCAACC
ATCGCGGATATGGAAGGTTTTCCTTCAGCGCGTGCGGTGTTTGCCAGCTCGATTCCCATCTTTGGTGTGAATATTCGCAT
CACTGTTTTTTGGTGGCTGCTGTTTGTTATCGTCGGCACTTTTGTGTTGTTTAAGACGCGCATCGGCAACTGGATTTTTG
CGGTCGGTGGCGATGAAGAGGCAGCTCGCGCAGTCGGCGTTCCCGTGCGTGGCGTGAAAATCGGCCTGTTCATGTTCGTT
GGTTTTGCCGCCTGGTTTGTGGGCATGCACAACCTGTTCCTGTTTGATTCGATTCAGGCTGGTCAAGGCGTGGGTAATGA
GTTCCTCTACATCATCGCTGCGGTGATCGGAGGCATCTCCATGACTGGTGGCCGCGGAACGGTGGTGGGCACAATGATTG
GTGCACTCATCTTTGGAATGACCAACCAAGGCATTGTTTATGCAGGTTGGAACCCTGACTGGTTCATGTTCTTCCTCGGC
GGCACCCTACTTCTGGCTGTTTTGCTCAATCACCGATTCGAGCGTTTCAACAAGGAGCGATCATGA

Upstream 100 bases:

>100_bases
GCACCACTGTTGGTGGCGGACGACCCGTGTACACAGGACCAGCCATTGTGGATGCCACCAACGTTGATGTCATTGCTGAA
GCCGTTGGGGAGGGTCTGCG

Downstream 100 bases:

>100_bases
CAGACCTCATTCAACTCCGCGAAGTATCCAAAAAATACGGTGCTTTCCAGGCTCTCAACGACATCAATTTGAGCGTCCGC
GCAGGCGAAGTCACCTGTGT

Product: hypothetical protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MTKIKSGEASTSIVERALKRPELTSLLGAVLVFTLFMVVAPAFRSWDSMATVLYASSTIGIMAVAVGLLMIADEFDLSTG
VAVTTAALAASMFSYNLWLNTWVGALIALVISLAIGFFNGFLVVKTKIASFLITLATFLMLQGINLAVTKLISGTVATPT
IADMEGFPSARAVFASSIPIFGVNIRITVFWWLLFVIVGTFVLFKTRIGNWIFAVGGDEEAARAVGVPVRGVKIGLFMFV
GFAAWFVGMHNLFLFDSIQAGQGVGNEFLYIIAAVIGGISMTGGRGTVVGTMIGALIFGMTNQGIVYAGWNPDWFMFFLG
GTLLLAVLLNHRFERFNKERS

Sequences:

>Translated_341_residues
MTKIKSGEASTSIVERALKRPELTSLLGAVLVFTLFMVVAPAFRSWDSMATVLYASSTIGIMAVAVGLLMIADEFDLSTG
VAVTTAALAASMFSYNLWLNTWVGALIALVISLAIGFFNGFLVVKTKIASFLITLATFLMLQGINLAVTKLISGTVATPT
IADMEGFPSARAVFASSIPIFGVNIRITVFWWLLFVIVGTFVLFKTRIGNWIFAVGGDEEAARAVGVPVRGVKIGLFMFV
GFAAWFVGMHNLFLFDSIQAGQGVGNEFLYIIAAVIGGISMTGGRGTVVGTMIGALIFGMTNQGIVYAGWNPDWFMFFLG
GTLLLAVLLNHRFERFNKERS
>Mature_340_residues
TKIKSGEASTSIVERALKRPELTSLLGAVLVFTLFMVVAPAFRSWDSMATVLYASSTIGIMAVAVGLLMIADEFDLSTGV
AVTTAALAASMFSYNLWLNTWVGALIALVISLAIGFFNGFLVVKTKIASFLITLATFLMLQGINLAVTKLISGTVATPTI
ADMEGFPSARAVFASSIPIFGVNIRITVFWWLLFVIVGTFVLFKTRIGNWIFAVGGDEEAARAVGVPVRGVKIGLFMFVG
FAAWFVGMHNLFLFDSIQAGQGVGNEFLYIIAAVIGGISMTGGRGTVVGTMIGALIFGMTNQGIVYAGWNPDWFMFFLGG
TLLLAVLLNHRFERFNKERS

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=314, Percent_Identity=29.9363057324841, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1788896, Length=318, Percent_Identity=30.188679245283, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87082395, Length=297, Percent_Identity=27.2727272727273, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI145693152, Length=317, Percent_Identity=29.3375394321767, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787794, Length=282, Percent_Identity=25.886524822695, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI145693214, Length=276, Percent_Identity=28.2608695652174, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790524, Length=218, Percent_Identity=27.5229357798165, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789992, Length=140, Percent_Identity=35, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 36669; Mature: 36538

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKIKSGEASTSIVERALKRPELTSLLGAVLVFTLFMVVAPAFRSWDSMATVLYASSTIG
CCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
IMAVAVGLLMIADEFDLSTGVAVTTAALAASMFSYNLWLNTWVGALIALVISLAIGFFNG
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FLVVKTKIASFLITLATFLMLQGINLAVTKLISGTVATPTIADMEGFPSARAVFASSIPI
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHCCCCCCCHHHHHHCCCCE
FGVNIRITVFWWLLFVIVGTFVLFKTRIGNWIFAVGGDEEAARAVGVPVRGVKIGLFMFV
EEEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHCCCCCHHHHHHHHHH
GFAAWFVGMHNLFLFDSIQAGQGVGNEFLYIIAAVIGGISMTGGRGTVVGTMIGALIFGM
HHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHCC
TNQGIVYAGWNPDWFMFFLGGTLLLAVLLNHRFERFNKERS
CCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TKIKSGEASTSIVERALKRPELTSLLGAVLVFTLFMVVAPAFRSWDSMATVLYASSTIG
CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
IMAVAVGLLMIADEFDLSTGVAVTTAALAASMFSYNLWLNTWVGALIALVISLAIGFFNG
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FLVVKTKIASFLITLATFLMLQGINLAVTKLISGTVATPTIADMEGFPSARAVFASSIPI
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHCCCCCCCHHHHHHCCCCE
FGVNIRITVFWWLLFVIVGTFVLFKTRIGNWIFAVGGDEEAARAVGVPVRGVKIGLFMFV
EEEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHCCCCCHHHHHHHHHH
GFAAWFVGMHNLFLFDSIQAGQGVGNEFLYIIAAVIGGISMTGGRGTVVGTMIGALIFGM
HHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHCC
TNQGIVYAGWNPDWFMFFLGGTLLLAVLLNHRFERFNKERS
CCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]