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The map label for this gene is rnpA

Identifier: 138897070

GI number: 138897070

Start: 3549473

End: 3549838

Strand: Reverse

Name: rnpA

Synonym: GTNG_3443

Alternate gene names: 138897070

Gene position: 3549838-3549473 (Counterclockwise)

Preceding gene: 138897071

Following gene: 138897069

Centisome position: 99.99

GC content: 46.72

Gene sequence:

>366_bases
ATGAAAAAAAAGTATCGGATCAAAAAAAACGAGGAATTTCAAGAAGTGTTTCGACGCGGTGTTTCGACGGCCAACCGCCA
GTTTGTTGTGTATACGCTTGACCGTCCGGAGCAGCCTTACTTTCGCATCGGGCTTTCGGTCAGCAAAAAGCTTGGCAAAG
CGGTTGTCAGAAACCAAATTAAACGATACGTCCGCCAATGTTTTCTTGAATTAAAAGAGGAGGTTGTCCCAGGCAAGGAC
TACGTCATTATTGCTAGGCAGCCTGTGGCTGAAATGGGCTATGCAGAAGTGAAAAAAAGCTTGCTCCATGTGCTGCGGAA
AGCTGGGGGATTGAAAAAGAGAGGCCGAACAACGGATTTGGCTTGA

Upstream 100 bases:

>100_bases
AGAAAGGTATTGTCTGCATAATAGGCCACTGAAACATCAGTGGTCTTTTTTCTCAACATTTTGCCGTCGGGAAATTAGGC
AAGTGGAGTGTTTCGGGAAA

Downstream 100 bases:

>100_bases
AAAAATGCTCCACGCGGCGAAAAAAGGTGGTAAAATACATACGTGAACTTGTACATGTGGGAGGAAAAAGAAGGTGAAAA
GGCGAATTCCATTGATTGTT

Product: ribonuclease P

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 121; Mature: 121

Protein sequence:

>121_residues
MKKKYRIKKNEEFQEVFRRGVSTANRQFVVYTLDRPEQPYFRIGLSVSKKLGKAVVRNQIKRYVRQCFLELKEEVVPGKD
YVIIARQPVAEMGYAEVKKSLLHVLRKAGGLKKRGRTTDLA

Sequences:

>Translated_121_residues
MKKKYRIKKNEEFQEVFRRGVSTANRQFVVYTLDRPEQPYFRIGLSVSKKLGKAVVRNQIKRYVRQCFLELKEEVVPGKD
YVIIARQPVAEMGYAEVKKSLLHVLRKAGGLKKRGRTTDLA
>Mature_121_residues
MKKKYRIKKNEEFQEVFRRGVSTANRQFVVYTLDRPEQPYFRIGLSVSKKLGKAVVRNQIKRYVRQCFLELKEEVVPGKD
YVIIARQPVAEMGYAEVKKSLLHVLRKAGGLKKRGRTTDLA

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_GEOTN (A4ITX4)

Other databases:

- EMBL:   CP000557
- RefSeq:   YP_001127523.1
- ProteinModelPortal:   A4ITX4
- SMR:   A4ITX4
- STRING:   A4ITX4
- GeneID:   4968364
- GenomeReviews:   CP000557_GR
- KEGG:   gtn:GTNG_3443
- NMPDR:   fig|420246.5.peg.3289
- eggNOG:   COG0594
- HOGENOM:   HBG728160
- OMA:   KIGNAVM
- ProtClustDB:   PRK00499
- BioCyc:   GTHE420246:GTNG_3443-MONOMER
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- InterPro:   IPR020539
- Gene3D:   G3DSA:3.30.230.10
- ProDom:   PD003629
- TIGRFAMs:   TIGR00188

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 14116; Mature: 14116

Theoretical pI: Translated: 10.95; Mature: 10.95

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKYRIKKNEEFQEVFRRGVSTANRQFVVYTLDRPEQPYFRIGLSVSKKLGKAVVRNQI
CCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHH
KRYVRQCFLELKEEVVPGKDYVIIARQPVAEMGYAEVKKSLLHVLRKAGGLKKRGRTTDL
HHHHHHHHHHHHHHHCCCCCEEEEECCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
A
C
>Mature Secondary Structure
MKKKYRIKKNEEFQEVFRRGVSTANRQFVVYTLDRPEQPYFRIGLSVSKKLGKAVVRNQI
CCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHH
KRYVRQCFLELKEEVVPGKDYVIIARQPVAEMGYAEVKKSLLHVLRKAGGLKKRGRTTDL
HHHHHHHHHHHHHHHCCCCCEEEEECCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA