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The map label for this gene is ychF [H]

Identifier: 138897057

GI number: 138897057

Start: 3535635

End: 3536735

Strand: Reverse

Name: ychF [H]

Synonym: GTNG_3428

Alternate gene names: 138897057

Gene position: 3536735-3535635 (Counterclockwise)

Preceding gene: 138897058

Following gene: 138897056

Centisome position: 99.62

GC content: 48.23

Gene sequence:

>1101_bases
ATGGGATTGACAGCAGGAATTGTCGGCTTGCCGAACGTCGGCAAATCGACGTTGTTTAACGCGATTACAAAGGCAGGAGC
TGAATCAGCCAACTATCCGTTTTGTACGATTGAACCGAACGTTGGTGTCGTCGAAGTACCTGATGAGCGGTTAAATGTAC
TGATGGAAATGTTCCAGCCGAAGCGGACGGTGCCGACCGTCTTTGAATTTACCGATATTGCCGGCATCGTCAAAGGAGCG
AGCAAAGGAGAAGGGCTCGGCAACAAGTTTTTATCGCACATTCGTCAAGTGGACGCGATTTGCCAAGTGGTTCGTTGTTT
TAACGATGAAAACATTACCCACGTTGCCGGCAAGGTCGATCCACTAGCCGATATTGAAACGATCAATTTGGAGCTTATTT
TCGCCGATTTAGAAACAGTAGACAAACGAATCGAACGGGTCGGCAAAATTGCCAAGCAAAAAGACAAAGAAGCAGCGTTT
GAATACGACATTTTGCTGCGATTAAAAGAGACGCTTGAAGCCGGCAAACCGGCGCGTACGGTCGAATTCACTGATGAAGA
GATGAGAGTCGTTAAACAGCTACATTTGTTGACGACAAAGCCAATGCTTTACGTCGCTAATGTCGGGGAAGAAGATGTGG
TTGATCCAGATAGCAATCCGTTCGTTGCTGAAGTGCGCGAGTTTGCGAAGAGCGACAATGCTGAGGTCATCGTCGTTTGC
GCTAAAATTGAAGAAGAAATCGCTGAATTCAGCGACGAAGAAAAACAACAGTTTTTGCAAGAGCTCGGCATTAAGCAGTC
TGGTCTTGACCAGCTTATCCGCGCTGCTTACAGCTTGCTGGGACTGGCCACATTTTTCACTGCCGGTGAGCAAGGAGTAC
GAGCATGGACGTTCCGGAAAGGAATGAAAGCGCCGCAATGCGCTGGCATTATTCACTCTGACTTTGAACGTGGATTTATT
CGCGCTGAAACTGTTTCGTACGCTGATTTAGTCGCTGCTGGATCGATGGCGGCAGCGCGGGAAGCCGGCAAAGTGCGCCT
CGAAGGAAAAGATTACGAAGTGCAAGATGGCGATATTATGCACTTCCGGTTTAACGTGTAA

Upstream 100 bases:

>100_bases
AAAAACGCTTTTTCCAGAACAGACTGGCGGTACGCTTGTCATTTTTCTTGCCAGCCCATATAATGAGGGAAGATGCGAAC
GGGAAAGAGGAGTGGGACGA

Downstream 100 bases:

>100_bases
CATAACGGCAAGTTCGAGGAAAAACGATCACATTTGCCGAAGGAAAACTCTCTAACTGGTACGCTGTTTTCCGCAATGGC
GCTGGAAGATGTTTGCGCAG

Product: GTP-dependent nucleic acid-binding protein EngD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 365

Protein sequence:

>366_residues
MGLTAGIVGLPNVGKSTLFNAITKAGAESANYPFCTIEPNVGVVEVPDERLNVLMEMFQPKRTVPTVFEFTDIAGIVKGA
SKGEGLGNKFLSHIRQVDAICQVVRCFNDENITHVAGKVDPLADIETINLELIFADLETVDKRIERVGKIAKQKDKEAAF
EYDILLRLKETLEAGKPARTVEFTDEEMRVVKQLHLLTTKPMLYVANVGEEDVVDPDSNPFVAEVREFAKSDNAEVIVVC
AKIEEEIAEFSDEEKQQFLQELGIKQSGLDQLIRAAYSLLGLATFFTAGEQGVRAWTFRKGMKAPQCAGIIHSDFERGFI
RAETVSYADLVAAGSMAAAREAGKVRLEGKDYEVQDGDIMHFRFNV

Sequences:

>Translated_366_residues
MGLTAGIVGLPNVGKSTLFNAITKAGAESANYPFCTIEPNVGVVEVPDERLNVLMEMFQPKRTVPTVFEFTDIAGIVKGA
SKGEGLGNKFLSHIRQVDAICQVVRCFNDENITHVAGKVDPLADIETINLELIFADLETVDKRIERVGKIAKQKDKEAAF
EYDILLRLKETLEAGKPARTVEFTDEEMRVVKQLHLLTTKPMLYVANVGEEDVVDPDSNPFVAEVREFAKSDNAEVIVVC
AKIEEEIAEFSDEEKQQFLQELGIKQSGLDQLIRAAYSLLGLATFFTAGEQGVRAWTFRKGMKAPQCAGIIHSDFERGFI
RAETVSYADLVAAGSMAAAREAGKVRLEGKDYEVQDGDIMHFRFNV
>Mature_365_residues
GLTAGIVGLPNVGKSTLFNAITKAGAESANYPFCTIEPNVGVVEVPDERLNVLMEMFQPKRTVPTVFEFTDIAGIVKGAS
KGEGLGNKFLSHIRQVDAICQVVRCFNDENITHVAGKVDPLADIETINLELIFADLETVDKRIERVGKIAKQKDKEAAFE
YDILLRLKETLEAGKPARTVEFTDEEMRVVKQLHLLTTKPMLYVANVGEEDVVDPDSNPFVAEVREFAKSDNAEVIVVCA
KIEEEIAEFSDEEKQQFLQELGIKQSGLDQLIRAAYSLLGLATFFTAGEQGVRAWTFRKGMKAPQCAGIIHSDFERGFIR
AETVSYADLVAAGSMAAAREAGKVRLEGKDYEVQDGDIMHFRFNV

Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI58761500, Length=369, Percent_Identity=45.5284552845528, Blast_Score=318, Evalue=6e-87,
Organism=Homo sapiens, GI58761502, Length=228, Percent_Identity=41.6666666666667, Blast_Score=168, Evalue=7e-42,
Organism=Homo sapiens, GI24308117, Length=111, Percent_Identity=36.9369369369369, Blast_Score=71, Evalue=2e-12,
Organism=Escherichia coli, GI1787454, Length=366, Percent_Identity=54.9180327868852, Blast_Score=415, Evalue=1e-117,
Organism=Escherichia coli, GI1789574, Length=134, Percent_Identity=31.3432835820896, Blast_Score=72, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17509631, Length=366, Percent_Identity=41.8032786885246, Blast_Score=318, Evalue=4e-87,
Organism=Caenorhabditis elegans, GI17508313, Length=102, Percent_Identity=36.2745098039216, Blast_Score=68, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6319499, Length=370, Percent_Identity=41.6216216216216, Blast_Score=269, Evalue=4e-73,
Organism=Saccharomyces cerevisiae, GI6321773, Length=381, Percent_Identity=35.9580052493438, Blast_Score=223, Evalue=5e-59,
Organism=Saccharomyces cerevisiae, GI6321649, Length=143, Percent_Identity=39.8601398601399, Blast_Score=82, Evalue=9e-17,
Organism=Saccharomyces cerevisiae, GI6321962, Length=147, Percent_Identity=27.891156462585, Blast_Score=66, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24640873, Length=367, Percent_Identity=41.6893732970027, Blast_Score=296, Evalue=2e-80,
Organism=Drosophila melanogaster, GI24640877, Length=367, Percent_Identity=41.6893732970027, Blast_Score=296, Evalue=2e-80,
Organism=Drosophila melanogaster, GI24640875, Length=367, Percent_Identity=41.6893732970027, Blast_Score=296, Evalue=2e-80,
Organism=Drosophila melanogaster, GI24640879, Length=326, Percent_Identity=39.5705521472393, Blast_Score=242, Evalue=4e-64,
Organism=Drosophila melanogaster, GI24585318, Length=137, Percent_Identity=32.1167883211679, Blast_Score=74, Evalue=2e-13,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR004396
- InterPro:   IPR013029
- InterPro:   IPR006073
- InterPro:   IPR002917
- InterPro:   IPR012676
- InterPro:   IPR023192 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]

EC number: NA

Molecular weight: Translated: 40414; Mature: 40282

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLTAGIVGLPNVGKSTLFNAITKAGAESANYPFCTIEPNVGVVEVPDERLNVLMEMFQP
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCHHHHHHHHHHHCC
KRTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFNDENITHVAGKVD
CCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCC
PLADIETINLELIFADLETVDKRIERVGKIAKQKDKEAAFEYDILLRLKETLEAGKPART
CCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
VEFTDEEMRVVKQLHLLTTKPMLYVANVGEEDVVDPDSNPFVAEVREFAKSDNAEVIVVC
EEECHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEE
AKIEEEIAEFSDEEKQQFLQELGIKQSGLDQLIRAAYSLLGLATFFTAGEQGVRAWTFRK
HHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHC
GMKAPQCAGIIHSDFERGFIRAETVSYADLVAAGSMAAAREAGKVRLEGKDYEVQDGDIM
CCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCHHHHHHCCCEEECCCCEEECCCCEE
HFRFNV
EEEECC
>Mature Secondary Structure 
GLTAGIVGLPNVGKSTLFNAITKAGAESANYPFCTIEPNVGVVEVPDERLNVLMEMFQP
CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCHHHHHHHHHHHCC
KRTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFNDENITHVAGKVD
CCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCC
PLADIETINLELIFADLETVDKRIERVGKIAKQKDKEAAFEYDILLRLKETLEAGKPART
CCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
VEFTDEEMRVVKQLHLLTTKPMLYVANVGEEDVVDPDSNPFVAEVREFAKSDNAEVIVVC
EEECHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEE
AKIEEEIAEFSDEEKQQFLQELGIKQSGLDQLIRAAYSLLGLATFFTAGEQGVRAWTFRK
HHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHC
GMKAPQCAGIIHSDFERGFIRAETVSYADLVAAGSMAAAREAGKVRLEGKDYEVQDGDIM
CCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCHHHHHHCCCEEECCCCEEECCCCEE
HFRFNV
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]