Click here to switch to the map view.

The map label for this gene is yecS [H]

Identifier: 138897015

GI number: 138897015

Start: 3493809

End: 3494465

Strand: Direct

Name: yecS [H]

Synonym: GTNG_3386

Alternate gene names: 138897015

Gene position: 3493809-3494465 (Clockwise)

Preceding gene: 138897014

Following gene: 138897016

Centisome position: 98.41

GC content: 50.38

Gene sequence:

>657_bases
ATGGATTTTCGTTTTGATATTATTGTTGAATACGCTCCTTACTTTTGGAAAGGGCTGCTCGTAACGATCGGCGTCTCATT
AGCCGGCATCGTGTTCGGCCTCATCCTCGGCCTGTTCATCGGCCTTGGGAAAATGTCCAGGCACCCACTCATCCGCCTGC
CGTTCACATGGTACATTAACTTTTTCCGCGGCACGCCACTTGTCGTGCAAATTTTGCTCGTCCATTTTGGTGCCATGCCG
CTTTTGCTTGCAGAACCGAACGCCCTCGTATCCTTAGTCGTCTCACTGTCACTGAACTCCGCCGCCTATGTCGCGGAAAT
TTTCCGCGCCGGTATCCAGTCCATCGACAAAGGGCAAATGGAAGCGGCTCGCTCGCTTGGGATGACGCACGCGCAAGCGA
TGCGATACATTATTTTGCCGCAGGCGTTAAAGCGGATGATTCCGCCGTTTGCGAACGAGTTTATCGTCTTGATTAAAGAT
TCGTCGCTCGGGATGATTATCGCCGCCCCGGAAATTATGTACTGGGGAAAAGCGGCCGCTGGTGAGTATTACCGCGTCTG
GGAGCCGTATTTAACCGTTGCATTTATCTATTTAATTTTGACGCTCTCCTTAAGCAAACTGTCACATTATCTTGAAAGGA
AGTATTCGACCCAATGA

Upstream 100 bases:

>100_bases
AATATTGAAAATTTAAAGCAACAACAATAAGCGCACGAACAAAGGAAAATGCGTAACTGCTAGCAAGTTACGCATTTTTC
TTAAGAGAAAGGTGAGATTG

Downstream 100 bases:

>100_bases
TCGATGTACGCCAATTAAAAAAATCGTTCGGTTCACTCCAAGTGTTAAAAGGAATCGACGCGCATATTCACGAAGGGGAA
GTTGTCGTCGTCATCGGCCC

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MDFRFDIIVEYAPYFWKGLLVTIGVSLAGIVFGLILGLFIGLGKMSRHPLIRLPFTWYINFFRGTPLVVQILLVHFGAMP
LLLAEPNALVSLVVSLSLNSAAYVAEIFRAGIQSIDKGQMEAARSLGMTHAQAMRYIILPQALKRMIPPFANEFIVLIKD
SSLGMIIAAPEIMYWGKAAAGEYYRVWEPYLTVAFIYLILTLSLSKLSHYLERKYSTQ

Sequences:

>Translated_218_residues
MDFRFDIIVEYAPYFWKGLLVTIGVSLAGIVFGLILGLFIGLGKMSRHPLIRLPFTWYINFFRGTPLVVQILLVHFGAMP
LLLAEPNALVSLVVSLSLNSAAYVAEIFRAGIQSIDKGQMEAARSLGMTHAQAMRYIILPQALKRMIPPFANEFIVLIKD
SSLGMIIAAPEIMYWGKAAAGEYYRVWEPYLTVAFIYLILTLSLSKLSHYLERKYSTQ
>Mature_218_residues
MDFRFDIIVEYAPYFWKGLLVTIGVSLAGIVFGLILGLFIGLGKMSRHPLIRLPFTWYINFFRGTPLVVQILLVHFGAMP
LLLAEPNALVSLVVSLSLNSAAYVAEIFRAGIQSIDKGQMEAARSLGMTHAQAMRYIILPQALKRMIPPFANEFIVLIKD
SSLGMIIAAPEIMYWGKAAAGEYYRVWEPYLTVAFIYLILTLSLSKLSHYLERKYSTQ

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=218, Percent_Identity=38.9908256880734, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1787030, Length=216, Percent_Identity=35.6481481481481, Blast_Score=130, Evalue=7e-32,
Organism=Escherichia coli, GI1786873, Length=224, Percent_Identity=34.8214285714286, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI87082239, Length=210, Percent_Identity=35.7142857142857, Blast_Score=119, Evalue=1e-28,
Organism=Escherichia coli, GI1788645, Length=228, Percent_Identity=29.3859649122807, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1787086, Length=216, Percent_Identity=31.9444444444444, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1786874, Length=239, Percent_Identity=28.4518828451883, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1788646, Length=213, Percent_Identity=28.6384976525822, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI48994930, Length=127, Percent_Identity=35.4330708661417, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1787087, Length=217, Percent_Identity=23.5023041474654, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24528; Mature: 24528

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFRFDIIVEYAPYFWKGLLVTIGVSLAGIVFGLILGLFIGLGKMSRHPLIRLPFTWYIN
CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHH
FFRGTPLVVQILLVHFGAMPLLLAEPNALVSLVVSLSLNSAAYVAEIFRAGIQSIDKGQM
HHCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHH
EAARSLGMTHAQAMRYIILPQALKRMIPPFANEFIVLIKDSSLGMIIAAPEIMYWGKAAA
HHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEECCHHHCCCCCCC
GEYYRVWEPYLTVAFIYLILTLSLSKLSHYLERKYSTQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDFRFDIIVEYAPYFWKGLLVTIGVSLAGIVFGLILGLFIGLGKMSRHPLIRLPFTWYIN
CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHH
FFRGTPLVVQILLVHFGAMPLLLAEPNALVSLVVSLSLNSAAYVAEIFRAGIQSIDKGQM
HHCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHH
EAARSLGMTHAQAMRYIILPQALKRMIPPFANEFIVLIKDSSLGMIIAAPEIMYWGKAAA
HHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEECCHHHCCCCCCC
GEYYRVWEPYLTVAFIYLILTLSLSKLSHYLERKYSTQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]