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The map label for this gene is yvrC [H]

Identifier: 138896537

GI number: 138896537

Start: 3007494

End: 3008306

Strand: Direct

Name: yvrC [H]

Synonym: GTNG_2900

Alternate gene names: 138896537

Gene position: 3007494-3008306 (Clockwise)

Preceding gene: 138896533

Following gene: 138896542

Centisome position: 84.71

GC content: 59.66

Gene sequence:

>813_bases
ATGAGAATCGTTTCTCTTTGCCCGAGCAATACGGAAATGCTCGCCTACCTTGGCCGGCTCGATGATGTCATCGCCGTTGA
CCAGTCTTCCGACTGGCCGCCCGCAGTAAAGCAGCTGCCAACCGTCGGGCCGGATTTGCGCATCGATATGGATGAAGTCG
AGGCGCTCAAACCGGATCTCGTCGTCGCCTCCTTAAGCGTGCCTGGGATGGAGCGCAACGTCGAAGAACTCGCGCGCCGC
CGCCTTCCCCATCTCGTGTTGGCACCCCATTCGCTTGACGACATTGCCTCTGATCTCCTTCGATTGGGGGAAGCGCTCGG
TGAAAAACAAAAAGCGGCTGAACTGGCTCGCCGCTACCATGAATGTCTGAACGAGTACCGCGAACGGGCAGCCGCTGTCA
CCGAACCGGCCCGCCTGTATTGGGAATGGTGGCCGCGCCCATTGTTTACCCCAGGCGGTGCCAACTGGCTGAGCGAGCTC
AGCGAACTCGCCGGCGGACGCAATATTTTCGCCGACTGCGCCAAAGCGAGCGTCCAGACGGAATGGGACGAAGTCGTCGC
CCGCAACCCGTCGCACATTTTGCTTGTGTGGGTCGGCGTGCAAACAAAAAAAATGAACGCAAATGCCGTGACCAAGCGCC
CAAACGCAGAACAAACCGAGGCAGTCCGCACCGGGCGCATCCATCTTCTCGAGGAGGCACTCTATTGCCGGCCGTCGCCA
CGCCTGCTTATCGGATTAAAAAAATTAGCGCCGCTGTTGCATCCGGCGCTGTTCCCTCCCGCTGACGACAGCGACCCGCT
CTTCGATCGCTGA

Upstream 100 bases:

>100_bases
TGGATTTTCCCTCTTTTCTTTTACTAGAAAAACGGAAGGGAAAATGATGAGACAAGGCGAATGAGTAAAAAAACGATGGA
TGAAGAAAGGACTAGCGCCC

Downstream 100 bases:

>100_bases
CGGGCGGGAGCCCCTCTATTAACTTTTCGACTCTAAGTATTGCTGGCGGAACACTTGCATCGTTTCATCCTCATTCAGCC
GCGTCAACTCTTCCTCGGAC

Product: ABC transporter substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MRIVSLCPSNTEMLAYLGRLDDVIAVDQSSDWPPAVKQLPTVGPDLRIDMDEVEALKPDLVVASLSVPGMERNVEELARR
RLPHLVLAPHSLDDIASDLLRLGEALGEKQKAAELARRYHECLNEYRERAAAVTEPARLYWEWWPRPLFTPGGANWLSEL
SELAGGRNIFADCAKASVQTEWDEVVARNPSHILLVWVGVQTKKMNANAVTKRPNAEQTEAVRTGRIHLLEEALYCRPSP
RLLIGLKKLAPLLHPALFPPADDSDPLFDR

Sequences:

>Translated_270_residues
MRIVSLCPSNTEMLAYLGRLDDVIAVDQSSDWPPAVKQLPTVGPDLRIDMDEVEALKPDLVVASLSVPGMERNVEELARR
RLPHLVLAPHSLDDIASDLLRLGEALGEKQKAAELARRYHECLNEYRERAAAVTEPARLYWEWWPRPLFTPGGANWLSEL
SELAGGRNIFADCAKASVQTEWDEVVARNPSHILLVWVGVQTKKMNANAVTKRPNAEQTEAVRTGRIHLLEEALYCRPSP
RLLIGLKKLAPLLHPALFPPADDSDPLFDR
>Mature_270_residues
MRIVSLCPSNTEMLAYLGRLDDVIAVDQSSDWPPAVKQLPTVGPDLRIDMDEVEALKPDLVVASLSVPGMERNVEELARR
RLPHLVLAPHSLDDIASDLLRLGEALGEKQKAAELARRYHECLNEYRERAAAVTEPARLYWEWWPRPLFTPGGANWLSEL
SELAGGRNIFADCAKASVQTEWDEVVARNPSHILLVWVGVQTKKMNANAVTKRPNAEQTEAVRTGRIHLLEEALYCRPSP
RLLIGLKKLAPLLHPALFPPADDSDPLFDR

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786353, Length=197, Percent_Identity=29.4416243654822, Blast_Score=74, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 30199; Mature: 30199

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIVSLCPSNTEMLAYLGRLDDVIAVDQSSDWPPAVKQLPTVGPDLRIDMDEVEALKPDL
CEEEEECCCCHHHHHHHHHHHCEEEECCCCCCCHHHHHCCCCCCCCEECHHHHHHCCCCE
VVASLSVPGMERNVEELARRRLPHLVLAPHSLDDIASDLLRLGEALGEKQKAAELARRYH
EEEECCCCCCCCCHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
ECLNEYRERAAAVTEPARLYWEWWPRPLFTPGGANWLSELSELAGGRNIFADCAKASVQT
HHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
EWDEVVARNPSHILLVWVGVQTKKMNANAVTKRPNAEQTEAVRTGRIHLLEEALYCRPSP
HHHHHHHCCCCEEEEEEECCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
RLLIGLKKLAPLLHPALFPPADDSDPLFDR
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MRIVSLCPSNTEMLAYLGRLDDVIAVDQSSDWPPAVKQLPTVGPDLRIDMDEVEALKPDL
CEEEEECCCCHHHHHHHHHHHCEEEECCCCCCCHHHHHCCCCCCCCEECHHHHHHCCCCE
VVASLSVPGMERNVEELARRRLPHLVLAPHSLDDIASDLLRLGEALGEKQKAAELARRYH
EEEECCCCCCCCCHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
ECLNEYRERAAAVTEPARLYWEWWPRPLFTPGGANWLSELSELAGGRNIFADCAKASVQT
HHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
EWDEVVARNPSHILLVWVGVQTKKMNANAVTKRPNAEQTEAVRTGRIHLLEEALYCRPSP
HHHHHHHCCCCEEEEEEECCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
RLLIGLKKLAPLLHPALFPPADDSDPLFDR
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]