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The map label for this gene is yokF [H]

Identifier: 138896505

GI number: 138896505

Start: 2978087

End: 2978959

Strand: Direct

Name: yokF [H]

Synonym: GTNG_2868

Alternate gene names: 138896505

Gene position: 2978087-2978959 (Clockwise)

Preceding gene: 138896504

Following gene: 138896510

Centisome position: 83.88

GC content: 52.35

Gene sequence:

>873_bases
ATGATTCTATTTCCCGCTTCCGTTTTCGCCCATCCAGGTACATTGGATGAATTGGGCGGGCATTTCCGCAACAGTGACTG
CACCTACTTGTTGCACGAACCGACCGCATTGGCGAAGCAGGCGAAAACGAAAGAAGAGCTGGTCAAGCTCATTCAAAAAT
ATAACGGCAATGAACGGTGCAAACGGAACCTCACTCCGGAACGGATTGACTTAGACGGCCATACGCTCGGGGGAAAAGAG
GACAATGCTTCGCTGCGGCTTGGCCGGACATACAAAGCGGCATTGGTGAAGTGCATTGACGGAGACACGGCCAAATTCCG
TGTGAACGGCCACGTGTATACGACGCGCTTTTTGTTCATCGACACCCCAGAAAGCACCATCGAAGTCGAACCATACGGAA
AAGAGGCGAGCCAGTTTACGTGTTCCCGACTGAAAAAAGGGGACATTGTGCTTGAAACAGATGGAAATACGTTGTTTGAC
AAATACCAACGGCTGCTCGCCTGGGTATGGGTCGACGACCGCCTGTTGCAAGAAGAGCTCGCTAAAGCCGGGCTAGTCGA
GGACTTTTATGACTATGGCGATTACAAATACGAACAACGCATCCGCAAAGCATACGAGGAAGCCAGACAAAATGGCGTCG
GCATATACAGTGGGCACTCTGCCGAGGAGAAGCCGAAAGTCGATTCGAAAACGAAAGCAGAGCCGGCGCAAACCAATCCG
CAGACCGAAGAGGAGACGAACAAAGCCGATCGTGAACGTAACCGTGAGCAAGAAGAACGAACTTCGGAACCATCAAGCGG
CCTCGTCCTTTATACATTGCTCGGCGCAGCGGCGGCTGCAGGGGTGTATTGGCTCATCCGCCAGCTGAAATGA

Upstream 100 bases:

>100_bases
ACATGTTCCGTTGCTTTCATCGCGTCTTTGCTGAAACAGCAACACCTTTTCGATCGGAGGGAGAGCTTTGAAACAAACTG
CGATTTTGTTTTTTTGCCTG

Downstream 100 bases:

>100_bases
CGACCGCCAACACCAAAAAGACCTGTCCGACACGGACAGGTCTTTTTTCATCGAAAGCAAGTTGCCGGTTTTGCTTCAAA
AGTTGCTCGTTCCCGCCTTG

Product: putative DNase/RNase endonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MILFPASVFAHPGTLDELGGHFRNSDCTYLLHEPTALAKQAKTKEELVKLIQKYNGNERCKRNLTPERIDLDGHTLGGKE
DNASLRLGRTYKAALVKCIDGDTAKFRVNGHVYTTRFLFIDTPESTIEVEPYGKEASQFTCSRLKKGDIVLETDGNTLFD
KYQRLLAWVWVDDRLLQEELAKAGLVEDFYDYGDYKYEQRIRKAYEEARQNGVGIYSGHSAEEKPKVDSKTKAEPAQTNP
QTEEETNKADRERNREQEERTSEPSSGLVLYTLLGAAAAAGVYWLIRQLK

Sequences:

>Translated_290_residues
MILFPASVFAHPGTLDELGGHFRNSDCTYLLHEPTALAKQAKTKEELVKLIQKYNGNERCKRNLTPERIDLDGHTLGGKE
DNASLRLGRTYKAALVKCIDGDTAKFRVNGHVYTTRFLFIDTPESTIEVEPYGKEASQFTCSRLKKGDIVLETDGNTLFD
KYQRLLAWVWVDDRLLQEELAKAGLVEDFYDYGDYKYEQRIRKAYEEARQNGVGIYSGHSAEEKPKVDSKTKAEPAQTNP
QTEEETNKADRERNREQEERTSEPSSGLVLYTLLGAAAAAGVYWLIRQLK
>Mature_290_residues
MILFPASVFAHPGTLDELGGHFRNSDCTYLLHEPTALAKQAKTKEELVKLIQKYNGNERCKRNLTPERIDLDGHTLGGKE
DNASLRLGRTYKAALVKCIDGDTAKFRVNGHVYTTRFLFIDTPESTIEVEPYGKEASQFTCSRLKKGDIVLETDGNTLFD
KYQRLLAWVWVDDRLLQEELAKAGLVEDFYDYGDYKYEQRIRKAYEEARQNGVGIYSGHSAEEKPKVDSKTKAEPAQTNP
QTEEETNKADRERNREQEERTSEPSSGLVLYTLLGAAAAAGVYWLIRQLK

Specific function: Catalyzes the hydrolysis of supercoiled double and single strand DNA and RNA. Involved in chromosomal DNA degradation and cell death caused by thermal stress [H]

COG id: COG1525

COG function: function code L; Micrococcal nuclease (thermonuclease) homologs

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TNase-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008613
- InterPro:   IPR016071
- InterPro:   IPR006021
- InterPro:   IPR002071 [H]

Pfam domain/function: PF05901 Excalibur; PF00565 SNase [H]

EC number: NA

Molecular weight: Translated: 32906; Mature: 32906

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: PS01284 TNASE_2 ; PS50830 TNASE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILFPASVFAHPGTLDELGGHFRNSDCTYLLHEPTALAKQAKTKEELVKLIQKYNGNERC
CEEECCHHHCCCCCHHHHCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHCCCCHHH
KRNLTPERIDLDGHTLGGKEDNASLRLGRTYKAALVKCIDGDTAKFRVNGHVYTTRFLFI
HHCCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHCCCCCEEEEECCEEEEEEEEEE
DTPESTIEVEPYGKEASQFTCSRLKKGDIVLETDGNTLFDKYQRLLAWVWVDDRLLQEEL
ECCCCEEEECCCCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
AKAGLVEDFYDYGDYKYEQRIRKAYEEARQNGVGIYSGHSAEEKPKVDSKTKAEPAQTNP
HHCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
QTEEETNKADRERNREQEERTSEPSSGLVLYTLLGAAAAAGVYWLIRQLK
CCHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MILFPASVFAHPGTLDELGGHFRNSDCTYLLHEPTALAKQAKTKEELVKLIQKYNGNERC
CEEECCHHHCCCCCHHHHCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHCCCCHHH
KRNLTPERIDLDGHTLGGKEDNASLRLGRTYKAALVKCIDGDTAKFRVNGHVYTTRFLFI
HHCCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHCCCCCEEEEECCEEEEEEEEEE
DTPESTIEVEPYGKEASQFTCSRLKKGDIVLETDGNTLFDKYQRLLAWVWVDDRLLQEEL
ECCCCEEEECCCCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
AKAGLVEDFYDYGDYKYEQRIRKAYEEARQNGVGIYSGHSAEEKPKVDSKTKAEPAQTNP
HHCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
QTEEETNKADRERNREQEERTSEPSSGLVLYTLLGAAAAAGVYWLIRQLK
CCHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]