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The map label for this gene is xpf [H]

Identifier: 138896469

GI number: 138896469

Start: 2947063

End: 2947494

Strand: Reverse

Name: xpf [H]

Synonym: GTNG_2832

Alternate gene names: 138896469

Gene position: 2947494-2947063 (Counterclockwise)

Preceding gene: 138896470

Following gene: 138896468

Centisome position: 83.02

GC content: 40.51

Gene sequence:

>432_bases
ATGAATGATCTTGTCCAAGAATATAAAAAATCCTTAAAAATGGCACGGAAAATGTATGATAATGCGGTTGAAGAAGATAA
AAAGATTATTGCTGGAATGATCTCTGATTTAGAATTTGCTATTGAGTGGATGGAACCTAGCAGGCCGGGAAACAGAAGAG
GCATTGAACGAAGAGCTACTTATCAGCGTGAAAAGCCGTTTGATCCATTGTTAATACAAAAGTTTTTTCGCTCAAGTGAG
CCAGTTTACGAATGGGACGATCATGAAAGGGAAAGCGTCATTACAAGTTGGGATCGCCAACGAATTGAGGATGCTTTATC
AGCGCTTACAGCTCGGGAACATGAAGTGTATTTAATGTCACGCGGATACGGCCTCACCTATAGCAAAACCGCAACTACCT
TTGTATATCATCCAGTAGCGTTCAAACCATGA

Upstream 100 bases:

>100_bases
AGAAAATGATGAAAATTGAGTTCCACTAGCCAACTGGAGGACACTGAATGAGCGTAACGCTCGTTTGGTGTCCTTTTTTC
ATTTGAAGGAGGTCGTCTAT

Downstream 100 bases:

>100_bases
TCGAAAGAGCTGAAAAGAAAATAAAAAGACATATAAACGAAAGCCTCTTCTGCTTATGCGGATGAGGCTTTTTTGTCGTG
TAAATGCCACTAATAAGTGA

Product: positive control sigma-like factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MNDLVQEYKKSLKMARKMYDNAVEEDKKIIAGMISDLEFAIEWMEPSRPGNRRGIERRATYQREKPFDPLLIQKFFRSSE
PVYEWDDHERESVITSWDRQRIEDALSALTAREHEVYLMSRGYGLTYSKTATTFVYHPVAFKP

Sequences:

>Translated_143_residues
MNDLVQEYKKSLKMARKMYDNAVEEDKKIIAGMISDLEFAIEWMEPSRPGNRRGIERRATYQREKPFDPLLIQKFFRSSE
PVYEWDDHERESVITSWDRQRIEDALSALTAREHEVYLMSRGYGLTYSKTATTFVYHPVAFKP
>Mature_143_residues
MNDLVQEYKKSLKMARKMYDNAVEEDKKIIAGMISDLEFAIEWMEPSRPGNRRGIERRATYQREKPFDPLLIQKFFRSSE
PVYEWDDHERESVITSWDRQRIEDALSALTAREHEVYLMSRGYGLTYSKTATTFVYHPVAFKP

Specific function: Positive regulatory protein that acts at the late promoter PL [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013249
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 16975; Mature: 16975

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDLVQEYKKSLKMARKMYDNAVEEDKKIIAGMISDLEFAIEWMEPSRPGNRRGIERRAT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
YQREKPFDPLLIQKFFRSSEPVYEWDDHERESVITSWDRQRIEDALSALTAREHEVYLMS
HHCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
RGYGLTYSKTATTFVYHPVAFKP
CCCCCEECCCHHEEEECCCCCCC
>Mature Secondary Structure
MNDLVQEYKKSLKMARKMYDNAVEEDKKIIAGMISDLEFAIEWMEPSRPGNRRGIERRAT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
YQREKPFDPLLIQKFFRSSEPVYEWDDHERESVITSWDRQRIEDALSALTAREHEVYLMS
HHCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
RGYGLTYSKTATTFVYHPVAFKP
CCCCCEECCCHHEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8083174; 9384377 [H]