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The map label for this gene is ysdC [H]

Identifier: 138896274

GI number: 138896274

Start: 2746475

End: 2747560

Strand: Reverse

Name: ysdC [H]

Synonym: GTNG_2637

Alternate gene names: 138896274

Gene position: 2747560-2746475 (Counterclockwise)

Preceding gene: 138896275

Following gene: 138896272

Centisome position: 77.39

GC content: 53.22

Gene sequence:

>1086_bases
ATGGCAAAATTGGACGAAACGTTAACAATGCTGAAAGCGTTGACGGATGCAAAAGGTGTCCCGGGCAATGAACGGGAAGC
GCGCGAAGTGATGAAAACATACATAGCCCCATATGCGGACGAAGTAACGACCGACGGTCTCGGCAGCTTGATCGCCAAAA
AAGAAGGAAAAGCTGGCGGACCGAAAGTCATGATTGCCGGCCATTTGGACGAAGTCGGCTTTATGGTCACGCAAATCGAT
GATAAAGGATTCATCCGCTTCCAAACGCTCGGCGGCTGGTGGAGCCAAGTGATGCTCGCCCAACGAGTGACCATCGTAAC
GAAAAAGGGCGACATCACCGGTGTGATCGGTTCGAAGCCGCCGCACATTTTGCCGCCGGAGGCGCGCAAAAAACCGGTTG
ATATTAAAGATATGTTCATTGACATCGGTGCGAAGAGCCGTGACGAAGCGATGGAGTGGGGCGTCCGCCCAGGCGATATG
ATCGTACCGTATTTTGAGTTTACCGTGTTGAACAATGAAAAAATGCTGTTAGCCAAAGCGTGGGACAACCGGATCGGCTG
TGCGATCGCCATTGATGTGCTCAAGCAGCTGAAAGGCGTTGACCACCCGAACACGGTGTATGGTGTCGGCACGGTACAGG
AAGAAGTCGGTTTGCGCGGGGCGCGCACGGCTGCCCAATTCATTCAACCGGACATCGCTTTTGCCGTTGACGTCGGCGTG
GCAGGCGATACGCCAGGTGTCTCGGAAAAAGAAGCGATGGGCAAGCTCGGCGCCGGCCCGCACATTGTCCTATACGATGC
AACGATGGTGTCGCATCGCGGTTTGCGCGAATTTGTCATCGAAGTGGCGGAAGAGCTGAACATTCCGTATCACTTTGACG
CCATGCCAGGCGGCGGCACGGACGCGGGGGCGATTCATTTAACCGGCAGCGGTGTCCCGTCACTGACGATTGCCATTCCA
ACCCGCTACATCCATTCGCATGCTTCCATTTTGCATCGCGATGACTATGAAAACACGGTCAAGCTATTAGTTGAAGTCAT
TAAACGGCTTGATGCTGATAAAGTGAACCAAATTACATTTGAATAA

Upstream 100 bases:

>100_bases
GGTATTAAGCTTTTTTGGAGAGCAAATGATTGAATTTTGCCAACCGCCAGCTTTTTCAGGTATAATGAAAAAGTGGACAA
AAACGGAAAGGGGTGTCAAG

Downstream 100 bases:

>100_bases
CGAGCGTAAGGAGGTTGCCTGAAAAGGCAGCCTCTTTTAGCGAAAAAGATCTGCGTATATACAGAACAGGAAACAGGTGT
CCCGAACGTTTTGGGACACC

Product: M42 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 360

Protein sequence:

>361_residues
MAKLDETLTMLKALTDAKGVPGNEREAREVMKTYIAPYADEVTTDGLGSLIAKKEGKAGGPKVMIAGHLDEVGFMVTQID
DKGFIRFQTLGGWWSQVMLAQRVTIVTKKGDITGVIGSKPPHILPPEARKKPVDIKDMFIDIGAKSRDEAMEWGVRPGDM
IVPYFEFTVLNNEKMLLAKAWDNRIGCAIAIDVLKQLKGVDHPNTVYGVGTVQEEVGLRGARTAAQFIQPDIAFAVDVGV
AGDTPGVSEKEAMGKLGAGPHIVLYDATMVSHRGLREFVIEVAEELNIPYHFDAMPGGGTDAGAIHLTGSGVPSLTIAIP
TRYIHSHASILHRDDYENTVKLLVEVIKRLDADKVNQITFE

Sequences:

>Translated_361_residues
MAKLDETLTMLKALTDAKGVPGNEREAREVMKTYIAPYADEVTTDGLGSLIAKKEGKAGGPKVMIAGHLDEVGFMVTQID
DKGFIRFQTLGGWWSQVMLAQRVTIVTKKGDITGVIGSKPPHILPPEARKKPVDIKDMFIDIGAKSRDEAMEWGVRPGDM
IVPYFEFTVLNNEKMLLAKAWDNRIGCAIAIDVLKQLKGVDHPNTVYGVGTVQEEVGLRGARTAAQFIQPDIAFAVDVGV
AGDTPGVSEKEAMGKLGAGPHIVLYDATMVSHRGLREFVIEVAEELNIPYHFDAMPGGGTDAGAIHLTGSGVPSLTIAIP
TRYIHSHASILHRDDYENTVKLLVEVIKRLDADKVNQITFE
>Mature_360_residues
AKLDETLTMLKALTDAKGVPGNEREAREVMKTYIAPYADEVTTDGLGSLIAKKEGKAGGPKVMIAGHLDEVGFMVTQIDD
KGFIRFQTLGGWWSQVMLAQRVTIVTKKGDITGVIGSKPPHILPPEARKKPVDIKDMFIDIGAKSRDEAMEWGVRPGDMI
VPYFEFTVLNNEKMLLAKAWDNRIGCAIAIDVLKQLKGVDHPNTVYGVGTVQEEVGLRGARTAAQFIQPDIAFAVDVGVA
GDTPGVSEKEAMGKLGAGPHIVLYDATMVSHRGLREFVIEVAEELNIPYHFDAMPGGGTDAGAIHLTGSGVPSLTIAIPT
RYIHSHASILHRDDYENTVKLLVEVIKRLDADKVNQITFE

Specific function: Putative aminopeptidase [H]

COG id: COG1363

COG function: function code G; Cellulase M and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M42 family [H]

Homologues:

Organism=Escherichia coli, GI1790332, Length=355, Percent_Identity=42.8169014084507, Blast_Score=300, Evalue=8e-83,
Organism=Escherichia coli, GI1788727, Length=355, Percent_Identity=35.2112676056338, Blast_Score=207, Evalue=7e-55,
Organism=Escherichia coli, GI87082417, Length=340, Percent_Identity=31.1764705882353, Blast_Score=170, Evalue=2e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008007 [H]

Pfam domain/function: PF05343 Peptidase_M42 [H]

EC number: NA

Molecular weight: Translated: 39226; Mature: 39095

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKLDETLTMLKALTDAKGVPGNEREAREVMKTYIAPYADEVTTDGLGSLIAKKEGKAGG
CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHCCCCCCC
PKVMIAGHLDEVGFMVTQIDDKGFIRFQTLGGWWSQVMLAQRVTIVTKKGDITGVIGSKP
CEEEEEECCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHEEEEEECCCEEEECCCCC
PHILPPEARKKPVDIKDMFIDIGAKSRDEAMEWGVRPGDMIVPYFEFTVLNNEKMLLAKA
CCCCCCHHCCCCCCHHHHEEECCCCCHHHHHHCCCCCCCEEEEEEEEEEECCCCEEEEEC
WDNRIGCAIAIDVLKQLKGVDHPNTVYGVGTVQEEVGLRGARTAAQFIQPDIAFAVDVGV
CCCCCCHHHHHHHHHHHHCCCCCCCEEECCCHHHHHCCCHHHHHHHHHCCCEEEEEEECC
AGDTPGVSEKEAMGKLGAGPHIVLYDATMVSHRGLREFVIEVAEELNIPYHFDAMPGGGT
CCCCCCCCHHHHHHHCCCCCEEEEEECHHHHHCCHHHHHHHHHHHCCCCEEEECCCCCCC
DAGAIHLTGSGVPSLTIAIPTRYIHSHASILHRDDYENTVKLLVEVIKRLDADKVNQITF
CCCEEEEECCCCCEEEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCC
E
C
>Mature Secondary Structure 
AKLDETLTMLKALTDAKGVPGNEREAREVMKTYIAPYADEVTTDGLGSLIAKKEGKAGG
CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHCCCCCCC
PKVMIAGHLDEVGFMVTQIDDKGFIRFQTLGGWWSQVMLAQRVTIVTKKGDITGVIGSKP
CEEEEEECCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHEEEEEECCCEEEECCCCC
PHILPPEARKKPVDIKDMFIDIGAKSRDEAMEWGVRPGDMIVPYFEFTVLNNEKMLLAKA
CCCCCCHHCCCCCCHHHHEEECCCCCHHHHHHCCCCCCCEEEEEEEEEEECCCCEEEEEC
WDNRIGCAIAIDVLKQLKGVDHPNTVYGVGTVQEEVGLRGARTAAQFIQPDIAFAVDVGV
CCCCCCHHHHHHHHHHHHCCCCCCCEEECCCHHHHHCCCHHHHHHHHHCCCEEEEEEECC
AGDTPGVSEKEAMGKLGAGPHIVLYDATMVSHRGLREFVIEVAEELNIPYHFDAMPGGGT
CCCCCCCCHHHHHHHCCCCCEEEEEECHHHHHCCHHHHHHHHHHHCCCCEEEECCCCCCC
DAGAIHLTGSGVPSLTIAIPTRYIHSHASILHRDDYENTVKLLVEVIKRLDADKVNQITF
CCCEEEEECCCCCEEEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]