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The map label for this gene is rnhC [H]

Identifier: 138896261

GI number: 138896261

Start: 2731262

End: 2732203

Strand: Direct

Name: rnhC [H]

Synonym: GTNG_2624

Alternate gene names: 138896261

Gene position: 2731262-2732203 (Clockwise)

Preceding gene: 138896240

Following gene: 138896262

Centisome position: 76.93

GC content: 55.63

Gene sequence:

>942_bases
TTGTCAAACTATGTGATTCACGCCGACCAAAAATTGCTTGCTACGTTGCGCGCCTACTATAAAGACGCCTTATCCGACCG
GCTTCCGGCCGGGGCGCTGTTTGCTGCAAAGCGCCCGGATGTCACGATCACTGCCTACCGCTCAGGCAAAGTGCTGTTTC
AAGGGAAAGCGGCAGAACAAGAGGCGGCAAAATGGATGGAGAATCACACAGCGCCTGAAAACAAACAAAAGGATCAGAAC
CGAGCAAAAACAACCGCCCTGTCGGAACAAGAACTCGGGAGTCTTTCCGCCATCGGCTCCGATGAAGTCGGAACCGGCGA
CTATTTCGGCCCAATCGTCGTTGCCGCCGCTTACGTTGACCGGGGTCATCTCGATCGAATCGCGGCGCTTGGCGTCAAAG
ATTCAAAGCAATTGAATGACGAAACGATCACGCGAATCGCACCGACCATCATGGAAACCGTGCCTTACGCCGTCACCGTG
CTCACCAACGCCGAATACAACCGCTGGCAGCAAAGCGGCATGCCGCAGACGAAAATGAAAGCGTTGCTCCATAACCGGAC
GCTCGCGAAACTCATTGACGACATCGCGCCCATCGAACCAGAAGCGATCATCATCGATCAGTTTTTGGAACGCAATTCAT
ATTTCCGCTACCTCGAAGATGAAACGCGCATCGTCCGCGAGCGGGTGCACTGCCTGCCAAAAGCAGAAGGGGTGCACGTC
GCCGTCGCCGCCGCCTCGATCATCGCCCGCTATATGTTTTTAGCGGAGATGGACAAACTATCCCGCACCGTCGGCCTTCC
GCTCCCGAAAGGCGCGGGCGCTATTGTCGATGAAGCCGCCGCCCAGCTTATCCGCCAACAAGGGGTTGGGGCGCTTGAGA
CGTGTGCCAAGCTTCATTTCGCGAATACAAAAAAAGCGCTCGACATCGCCAAACACTCGTAA

Upstream 100 bases:

>100_bases
TGCTTCCCCCATTTCGCAAAATCCTACTGTTTATCATATCATGAATGCTGGTATAATGGAAAGATGCGGCCCAAAGAGAC
AATAAAGGAGCGATCAAACG

Downstream 100 bases:

>100_bases
TGGTTCGCCCCTTCCCTTCCTCCGATTGCCAAGGGCAAAAGCGAAACCATCATCTTATGCCCCCACTCGTCTCGCTACAT
GTCAAGGTGGGGGCTTCTGT

Product: ribonuclease HIII

Products: NA

Alternate protein names: RNase HIII [H]

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MSNYVIHADQKLLATLRAYYKDALSDRLPAGALFAAKRPDVTITAYRSGKVLFQGKAAEQEAAKWMENHTAPENKQKDQN
RAKTTALSEQELGSLSAIGSDEVGTGDYFGPIVVAAAYVDRGHLDRIAALGVKDSKQLNDETITRIAPTIMETVPYAVTV
LTNAEYNRWQQSGMPQTKMKALLHNRTLAKLIDDIAPIEPEAIIIDQFLERNSYFRYLEDETRIVRERVHCLPKAEGVHV
AVAAASIIARYMFLAEMDKLSRTVGLPLPKGAGAIVDEAAAQLIRQQGVGALETCAKLHFANTKKALDIAKHS

Sequences:

>Translated_313_residues
MSNYVIHADQKLLATLRAYYKDALSDRLPAGALFAAKRPDVTITAYRSGKVLFQGKAAEQEAAKWMENHTAPENKQKDQN
RAKTTALSEQELGSLSAIGSDEVGTGDYFGPIVVAAAYVDRGHLDRIAALGVKDSKQLNDETITRIAPTIMETVPYAVTV
LTNAEYNRWQQSGMPQTKMKALLHNRTLAKLIDDIAPIEPEAIIIDQFLERNSYFRYLEDETRIVRERVHCLPKAEGVHV
AVAAASIIARYMFLAEMDKLSRTVGLPLPKGAGAIVDEAAAQLIRQQGVGALETCAKLHFANTKKALDIAKHS
>Mature_312_residues
SNYVIHADQKLLATLRAYYKDALSDRLPAGALFAAKRPDVTITAYRSGKVLFQGKAAEQEAAKWMENHTAPENKQKDQNR
AKTTALSEQELGSLSAIGSDEVGTGDYFGPIVVAAAYVDRGHLDRIAALGVKDSKQLNDETITRIAPTIMETVPYAVTVL
TNAEYNRWQQSGMPQTKMKALLHNRTLAKLIDDIAPIEPEAIIIDQFLERNSYFRYLEDETRIVRERVHCLPKAEGVHVA
VAAASIIARYMFLAEMDKLSRTVGLPLPKGAGAIVDEAAAQLIRQQGVGALETCAKLHFANTKKALDIAKHS

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG1039

COG function: function code L; Ribonuclease HIII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family. RnhC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001352
- InterPro:   IPR004641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 34416; Mature: 34285

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: PS01070 NUCLEASE_NON_SPEC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNYVIHADQKLLATLRAYYKDALSDRLPAGALFAAKRPDVTITAYRSGKVLFQGKAAEQ
CCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEEEECCCEEEECCCHHH
EAAKWMENHTAPENKQKDQNRAKTTALSEQELGSLSAIGSDEVGTGDYFGPIVVAAAYVD
HHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHCCHHCCCCCCCCCCCHHHHHHHHHHHHC
RGHLDRIAALGVKDSKQLNDETITRIAPTIMETVPYAVTVLTNAEYNRWQQSGMPQTKMK
CCHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHCCCCHHHHH
ALLHNRTLAKLIDDIAPIEPEAIIIDQFLERNSYFRYLEDETRIVRERVHCLPKAEGVHV
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCH
AVAAASIIARYMFLAEMDKLSRTVGLPLPKGAGAIVDEAAAQLIRQQGVGALETCAKLHF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
ANTKKALDIAKHS
CCCHHHHHHHCCC
>Mature Secondary Structure 
SNYVIHADQKLLATLRAYYKDALSDRLPAGALFAAKRPDVTITAYRSGKVLFQGKAAEQ
CCCEEECCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEEEECCCEEEECCCHHH
EAAKWMENHTAPENKQKDQNRAKTTALSEQELGSLSAIGSDEVGTGDYFGPIVVAAAYVD
HHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHCCHHCCCCCCCCCCCHHHHHHHHHHHHC
RGHLDRIAALGVKDSKQLNDETITRIAPTIMETVPYAVTVLTNAEYNRWQQSGMPQTKMK
CCHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHCCCCHHHHH
ALLHNRTLAKLIDDIAPIEPEAIIIDQFLERNSYFRYLEDETRIVRERVHCLPKAEGVHV
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCH
AVAAASIIARYMFLAEMDKLSRTVGLPLPKGAGAIVDEAAAQLIRQQGVGALETCAKLHF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
ANTKKALDIAKHS
CCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA