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The map label for this gene is spoVAF [H]

Identifier: 138896020

GI number: 138896020

Start: 2496415

End: 2497878

Strand: Reverse

Name: spoVAF [H]

Synonym: GTNG_2383

Alternate gene names: 138896020

Gene position: 2497878-2496415 (Counterclockwise)

Preceding gene: 138896022

Following gene: 138896019

Centisome position: 70.36

GC content: 52.19

Gene sequence:

>1464_bases
ATGGAAAAACGAGTGCCAAAACAACCAGCCTCCCGCCGCCTTCATGACAATGCTGCTTACTTATCGGAGCGGCTTGGGGT
CGACAAAAGTTTTGATGTCATTCGCCTTGACGTTGAGTATGGCGGCCGGGCCATGGCGTTGTTTATGATTGATGGATTTG
TCAAAGACGATATGTTGCACTATTTAATGGAATATTTATCTGGTCTTGAAGAACATGAACTTAAAAACCATCCGCTCGAG
AAGTTGTTAAAGACACATCTTCCTTACGTTGAAATCGGGCAAACAGACGATCTCGAAGAAGCAGCCGCCGCGGTGCTTGC
AGGACCGACAGCACTCGTCGTTGATGGGGTTGAACATATCATTTTGATTGATGCCCGCACTTATCCGGTGCGCGGACCGG
AAGAACCGGATACCGAGCGGGTGGTGCGCGGGGCGCGCGATGGCTTCGTGGAAACGATCGCCTTTAATACGGCCCTCATC
CGCCGCCGCGTCCGCGACCCGTCGCTGCGCATGGAATATGTGCAGGTGGCGCGTCGTTCAAAAACCGATATTTGTATTTG
CTACATCGAGGAAATTGCCGATCCGGAGCTGGTTCGCCGTGTTCGTGAATCGATCGCCGCCATTGACACGGACGGACTCG
TAATGGCGGAAAAAACGGTCGAGGAGTTTGTTTCTGGGCGGCATTGGAATCCATATCCCGTTGTCCGCTATACGGAACGT
CCCGATACGGCGGCCGCCCATTTGTATGAAGGGCATGTGCTTGTCATTGTTGACGGATCGCCAAGCGTCATGATTACTCC
GGCGACGTTTTGGCATCATTTGCAGCATGCCGAAGAATATCGGAACAAGCCGATCGTCGGAGCGTATTTGCGGCTTGTCC
GTTTTTTAGCTGTCTGGGCGTCGGTGTTTTTGTTGCCGCTTTGGTACTTGTTCATGACAGAGCCGGAGCTGTTGCCGGGG
GCGTTGCAATTTTTAGGAAAGGCGAATTTAGGTGATATTCCACTTTTTGCCCAACTTCTTATGATTGAAGTGGGGATGGA
TATGTTGCGGATGGCCGCCATTCATACACCGTCATCGCTGGCCACTGCGCTTGGCCTTGTCGCCGCGCTCATGATCGGCG
GCATTGCGGTAGAAGTTGGTCTCTTTTCCAATGAGGTCATTTTATATTTTTCGGTTGCTGCGATCGGCACATTTGCAACG
CCGAGCTATGAAATGAGTTTGGCAAACCGGCTCGTCCGTATTGCTTTGCTCATTTTGTCGGGCTTGTTCGGCCTGTTTGG
CTATGTGCTCGGCATTGCTGTTTGGATCATTGCATTGGCCAGAATGTCGTCATTTGGCATTCCATACTTATGGCCGTTTA
TCCCGTTTTCTTACCGGGGGATGCGTGATGTGCTCATCCGTTCGCCGATGCCGTTGAAAAACCGGCGGCCGGCTATTCTC
CATCCGCGCGACCCCGATCGTTAG

Upstream 100 bases:

>100_bases
TTGTCACCAATATATGCATCGCAAGGAACATTTATGTATGAATTTCCTTTTCATTGTCTATGATGAGGAGTATATAGTGA
ACGATCTGCAGGGGATGATG

Downstream 100 bases:

>100_bases
CGCAGGCGCTGATAGAAGCAGCGCCTGCATTTTTTTGCCTTGACTGTCACGGTGGTTTGCCGCTACATTAAAAAGAGAGA
AAAGGAGCTTAGAAGACGAT

Product: stage V sporulation protein AF-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 487; Mature: 487

Protein sequence:

>487_residues
MEKRVPKQPASRRLHDNAAYLSERLGVDKSFDVIRLDVEYGGRAMALFMIDGFVKDDMLHYLMEYLSGLEEHELKNHPLE
KLLKTHLPYVEIGQTDDLEEAAAAVLAGPTALVVDGVEHIILIDARTYPVRGPEEPDTERVVRGARDGFVETIAFNTALI
RRRVRDPSLRMEYVQVARRSKTDICICYIEEIADPELVRRVRESIAAIDTDGLVMAEKTVEEFVSGRHWNPYPVVRYTER
PDTAAAHLYEGHVLVIVDGSPSVMITPATFWHHLQHAEEYRNKPIVGAYLRLVRFLAVWASVFLLPLWYLFMTEPELLPG
ALQFLGKANLGDIPLFAQLLMIEVGMDMLRMAAIHTPSSLATALGLVAALMIGGIAVEVGLFSNEVILYFSVAAIGTFAT
PSYEMSLANRLVRIALLILSGLFGLFGYVLGIAVWIIALARMSSFGIPYLWPFIPFSYRGMRDVLIRSPMPLKNRRPAIL
HPRDPDR

Sequences:

>Translated_487_residues
MEKRVPKQPASRRLHDNAAYLSERLGVDKSFDVIRLDVEYGGRAMALFMIDGFVKDDMLHYLMEYLSGLEEHELKNHPLE
KLLKTHLPYVEIGQTDDLEEAAAAVLAGPTALVVDGVEHIILIDARTYPVRGPEEPDTERVVRGARDGFVETIAFNTALI
RRRVRDPSLRMEYVQVARRSKTDICICYIEEIADPELVRRVRESIAAIDTDGLVMAEKTVEEFVSGRHWNPYPVVRYTER
PDTAAAHLYEGHVLVIVDGSPSVMITPATFWHHLQHAEEYRNKPIVGAYLRLVRFLAVWASVFLLPLWYLFMTEPELLPG
ALQFLGKANLGDIPLFAQLLMIEVGMDMLRMAAIHTPSSLATALGLVAALMIGGIAVEVGLFSNEVILYFSVAAIGTFAT
PSYEMSLANRLVRIALLILSGLFGLFGYVLGIAVWIIALARMSSFGIPYLWPFIPFSYRGMRDVLIRSPMPLKNRRPAIL
HPRDPDR
>Mature_487_residues
MEKRVPKQPASRRLHDNAAYLSERLGVDKSFDVIRLDVEYGGRAMALFMIDGFVKDDMLHYLMEYLSGLEEHELKNHPLE
KLLKTHLPYVEIGQTDDLEEAAAAVLAGPTALVVDGVEHIILIDARTYPVRGPEEPDTERVVRGARDGFVETIAFNTALI
RRRVRDPSLRMEYVQVARRSKTDICICYIEEIADPELVRRVRESIAAIDTDGLVMAEKTVEEFVSGRHWNPYPVVRYTER
PDTAAAHLYEGHVLVIVDGSPSVMITPATFWHHLQHAEEYRNKPIVGAYLRLVRFLAVWASVFLLPLWYLFMTEPELLPG
ALQFLGKANLGDIPLFAQLLMIEVGMDMLRMAAIHTPSSLATALGLVAALMIGGIAVEVGLFSNEVILYFSVAAIGTFAT
PSYEMSLANRLVRIALLILSGLFGLFGYVLGIAVWIIALARMSSFGIPYLWPFIPFSYRGMRDVLIRSPMPLKNRRPAIL
HPRDPDR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004995 [H]

Pfam domain/function: PF03323 GerA [H]

EC number: NA

Molecular weight: Translated: 54751; Mature: 54751

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: PS00116 DNA_POLYMERASE_B

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKRVPKQPASRRLHDNAAYLSERLGVDKSFDVIRLDVEYGGRAMALFMIDGFVKDDMLH
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEHHHHHHHHHHHH
YLMEYLSGLEEHELKNHPLEKLLKTHLPYVEIGQTDDLEEAAAAVLAGPTALVVDGVEHI
HHHHHHCCCHHHHHCCCCHHHHHHHCCCEEECCCCCCHHHHHHHHHCCCHHEEECCCCEE
ILIDARTYPVRGPEEPDTERVVRGARDGFVETIAFNTALIRRRVRDPSLRMEYVQVARRS
EEEECCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
KTDICICYIEEIADPELVRRVRESIAAIDTDGLVMAEKTVEEFVSGRHWNPYPVVRYTER
CCCEEEEEHHHHCCHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCCCCCCEEECCC
PDTAAAHLYEGHVLVIVDGSPSVMITPATFWHHLQHAEEYRNKPIVGAYLRLVRFLAVWA
CCHHHHHEECCEEEEEECCCCCEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
SVFLLPLWYLFMTEPELLPGALQFLGKANLGDIPLFAQLLMIEVGMDMLRMAAIHTPSSL
HHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH
ATALGLVAALMIGGIAVEVGLFSNEVILYFSVAAIGTFATPSYEMSLANRLVRIALLILS
HHHHHHHHHHHHHHHHEEEECCCCCEEEEEEHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
GLFGLFGYVLGIAVWIIALARMSSFGIPYLWPFIPFSYRGMRDVLIRSPMPLKNRRPAIL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCEE
HPRDPDR
CCCCCCC
>Mature Secondary Structure
MEKRVPKQPASRRLHDNAAYLSERLGVDKSFDVIRLDVEYGGRAMALFMIDGFVKDDMLH
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEHHHHHHHHHHHH
YLMEYLSGLEEHELKNHPLEKLLKTHLPYVEIGQTDDLEEAAAAVLAGPTALVVDGVEHI
HHHHHHCCCHHHHHCCCCHHHHHHHCCCEEECCCCCCHHHHHHHHHCCCHHEEECCCCEE
ILIDARTYPVRGPEEPDTERVVRGARDGFVETIAFNTALIRRRVRDPSLRMEYVQVARRS
EEEECCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
KTDICICYIEEIADPELVRRVRESIAAIDTDGLVMAEKTVEEFVSGRHWNPYPVVRYTER
CCCEEEEEHHHHCCHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCCCCCCEEECCC
PDTAAAHLYEGHVLVIVDGSPSVMITPATFWHHLQHAEEYRNKPIVGAYLRLVRFLAVWA
CCHHHHHEECCEEEEEECCCCCEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
SVFLLPLWYLFMTEPELLPGALQFLGKANLGDIPLFAQLLMIEVGMDMLRMAAIHTPSSL
HHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH
ATALGLVAALMIGGIAVEVGLFSNEVILYFSVAAIGTFATPSYEMSLANRLVRIALLILS
HHHHHHHHHHHHHHHHEEEECCCCCEEEEEEHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
GLFGLFGYVLGIAVWIIALARMSSFGIPYLWPFIPFSYRGMRDVLIRSPMPLKNRRPAIL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCEE
HPRDPDR
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 7934829; 1368705; 3926949 [H]