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The map label for this gene is yqiR [H]

Identifier: 138895953

GI number: 138895953

Start: 2434844

End: 2436907

Strand: Reverse

Name: yqiR [H]

Synonym: GTNG_2312

Alternate gene names: 138895953

Gene position: 2436907-2434844 (Counterclockwise)

Preceding gene: 138895955

Following gene: 138895952

Centisome position: 68.64

GC content: 51.36

Gene sequence:

>2064_bases
ATGAAAAAAGTGATCATTATTGGTGCCGATGCGCGGGGGACGTCATTGCTGAAACTGCTTCATGAAGCCTCGGGATTTGC
CGTCATGGCGGTGATTGATGTCGATGACAATGCCCCAGGGCTGCAGCTGGCGCGGAAGTGGGGCATCGTTGCCGCCAATG
ACTGGCGTCCGTGGATGGATAAACCACTTGACTTGATTATTGAAACAACCGGCAGGGCGGACGTCCTTGAAGAGATCCGC
CAGTTGGCGCCCAAAGGGGCGAACATCGTTCCAAGTGCGGTTGCGAGAATGATGGCCGAGCTCGTCGAAGAAAAGGAAGC
ACTGATTGCTGAACTGAAAAGCGAGGCGACTCGGCGTGCACTCATTTTTCACTCGTCCCACGATGGCATGATAGTCGTTG
ATGAATATGCTTACATTACCGATATGAATGAAAGCGCTGCTGAGCTGCTTGAGGTGGATAAAGACAAAGTCATTGGCGAG
CACATTTTATCGGTCTTGCCATCAAGCGGTTTACCGCGTGTGCTGAAAACGAGGCAGACGGAGTTTCACCAAGAAGTGGA
GTTGGCTAATGGAAAAAAATTGATTACCACCCGCATCCCGATTATCGACGAGAGCGGGAAGTTGTTTGGAGCGCTTGCCG
TATTCAAAGATATTACTGAACTGGTCGCTTTAGCCGAAGAAATCACGGACTTAAAAGAAATGCGCATGATGCTTGAAGCG
ATTATTCATTCGTCGGAAGAAGCGATCTCAGTCGTTGATGAAAACGGGAATGGCATTTTGATCAACCCAGCGTATACTCG
TCTCACCGGCTTGACGAAAGAGGAAGTGATCGGAAAGCCGGCGACCGCCGACATCGCCGAAGGAGAAAGCATGCATATGC
AAGTGTTGAAAACGCGCCGGCCAGTGCGCGGAGTGCGCATGAAAGTCGGCCCTAAAAACCGCGACGTTGTCGTTAATGTT
GCCCCGATCATTGTTGATGGCGTATTAAAAGGGAGTGTCGGCGTCATTCATGACGTGTCGGAAATCCAGCGGCTAACGGC
TGAACTGAACCGGGCGCGGCAAATTATTCGCACGCTCGAGGCGAAATATTCGTTTGCCGATATTATCGGTGAAGCCGACG
AGATGAAAGTGGCGATTGAGCAGGCGAAACTGGCAGCGAAAACGCCTGTGACGATTTTGCTGCGCGGCGAATCGGGGACA
GGTAAAGAGCTGTTTGCCCATGCCATTCATAATGCCAGCGATCGGAAGTATAACAAGTTTATCCGTGTCAATTGTGCAGC
CATTCCGGAAACATTATTAGAGAGCGAACTATTTGGCTATGAAGAAGGGGCGTTTTCCGGCGCGAGGCGCGGCGGAAAGC
GCGGGTTGTTTGAAGAAGCAAACAACGGAAGTATTTTTCTCGATGAAATTGGTGAATTGTCAGCGAGCACGCAAGCGAAG
CTACTTCGCGTCTTGCAAGAGAGAGAAATTGTTCGCGTTGGCGGAACGAAGCCGATTCCGATCAATGTTCGCGTCATTGC
CGCGACGAATGTCAATTTAGAAAAAGCGATTGCCGACGGCACATTTCGCGAAGACTTATATTACCGGCTCAATCGGATGC
CCATTTATATCCCGCCGCTGCGTGCCCGCAAAGAAGACATTCCGGCTCTTTGCCGACACTTGATCCAAAAGCTGAACCAA
GATTACGGCCGCAACGTCGAAGGGGTGACGAACGAAGCGATGGCACGGCTTTTGGCCTATGATTGGCCAGGGAACGTCCG
CGAACTTGAAAATGTGCTCGGACGGGCGATGATTTTCATGAAGTTTCACGAGGTGATGATCGATGTTGAGCATTTGCCGC
CCCTTGCCACACCATCGCCGACGACAGTGTCCCGCGTCGAAGCGGAAGAACCGCTTCGGCCGCTTGATGAGATGGTCGGT
GAGTACGAGGCGCGTTTGTTAGAGCGGGCGCTCCGACGTTATCATGGCAATAAAACAGCGACTGCCCGGGCACTCGGCAT
TTCAGTGCGCAACTTGTACTATAAATTAGAAAAATACGGACTTGACAAAAAAAGCATGCAGTAA

Upstream 100 bases:

>100_bases
ACTATCATAGCGGTTATCGACTGTTTGTCAAGGAAAGAAAAAACAAGTATGATAAAAATGCCTGCAAAATTTGGCATGAA
ATAAAGAGTGGTGAACCGTG

Downstream 100 bases:

>100_bases
TTTTCATACAATGAAAAAAGTTGCATAATTTCATTCTCATGCAATTGTTATTTTTAAGCGCTTTCACACTTTTGTAATTG
GCACGGTTTTTGCATATAAA

Product: sensory box sigma-54 dependent DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 687; Mature: 687

Protein sequence:

>687_residues
MKKVIIIGADARGTSLLKLLHEASGFAVMAVIDVDDNAPGLQLARKWGIVAANDWRPWMDKPLDLIIETTGRADVLEEIR
QLAPKGANIVPSAVARMMAELVEEKEALIAELKSEATRRALIFHSSHDGMIVVDEYAYITDMNESAAELLEVDKDKVIGE
HILSVLPSSGLPRVLKTRQTEFHQEVELANGKKLITTRIPIIDESGKLFGALAVFKDITELVALAEEITDLKEMRMMLEA
IIHSSEEAISVVDENGNGILINPAYTRLTGLTKEEVIGKPATADIAEGESMHMQVLKTRRPVRGVRMKVGPKNRDVVVNV
APIIVDGVLKGSVGVIHDVSEIQRLTAELNRARQIIRTLEAKYSFADIIGEADEMKVAIEQAKLAAKTPVTILLRGESGT
GKELFAHAIHNASDRKYNKFIRVNCAAIPETLLESELFGYEEGAFSGARRGGKRGLFEEANNGSIFLDEIGELSASTQAK
LLRVLQEREIVRVGGTKPIPINVRVIAATNVNLEKAIADGTFREDLYYRLNRMPIYIPPLRARKEDIPALCRHLIQKLNQ
DYGRNVEGVTNEAMARLLAYDWPGNVRELENVLGRAMIFMKFHEVMIDVEHLPPLATPSPTTVSRVEAEEPLRPLDEMVG
EYEARLLERALRRYHGNKTATARALGISVRNLYYKLEKYGLDKKSMQ

Sequences:

>Translated_687_residues
MKKVIIIGADARGTSLLKLLHEASGFAVMAVIDVDDNAPGLQLARKWGIVAANDWRPWMDKPLDLIIETTGRADVLEEIR
QLAPKGANIVPSAVARMMAELVEEKEALIAELKSEATRRALIFHSSHDGMIVVDEYAYITDMNESAAELLEVDKDKVIGE
HILSVLPSSGLPRVLKTRQTEFHQEVELANGKKLITTRIPIIDESGKLFGALAVFKDITELVALAEEITDLKEMRMMLEA
IIHSSEEAISVVDENGNGILINPAYTRLTGLTKEEVIGKPATADIAEGESMHMQVLKTRRPVRGVRMKVGPKNRDVVVNV
APIIVDGVLKGSVGVIHDVSEIQRLTAELNRARQIIRTLEAKYSFADIIGEADEMKVAIEQAKLAAKTPVTILLRGESGT
GKELFAHAIHNASDRKYNKFIRVNCAAIPETLLESELFGYEEGAFSGARRGGKRGLFEEANNGSIFLDEIGELSASTQAK
LLRVLQEREIVRVGGTKPIPINVRVIAATNVNLEKAIADGTFREDLYYRLNRMPIYIPPLRARKEDIPALCRHLIQKLNQ
DYGRNVEGVTNEAMARLLAYDWPGNVRELENVLGRAMIFMKFHEVMIDVEHLPPLATPSPTTVSRVEAEEPLRPLDEMVG
EYEARLLERALRRYHGNKTATARALGISVRNLYYKLEKYGLDKKSMQ
>Mature_687_residues
MKKVIIIGADARGTSLLKLLHEASGFAVMAVIDVDDNAPGLQLARKWGIVAANDWRPWMDKPLDLIIETTGRADVLEEIR
QLAPKGANIVPSAVARMMAELVEEKEALIAELKSEATRRALIFHSSHDGMIVVDEYAYITDMNESAAELLEVDKDKVIGE
HILSVLPSSGLPRVLKTRQTEFHQEVELANGKKLITTRIPIIDESGKLFGALAVFKDITELVALAEEITDLKEMRMMLEA
IIHSSEEAISVVDENGNGILINPAYTRLTGLTKEEVIGKPATADIAEGESMHMQVLKTRRPVRGVRMKVGPKNRDVVVNV
APIIVDGVLKGSVGVIHDVSEIQRLTAELNRARQIIRTLEAKYSFADIIGEADEMKVAIEQAKLAAKTPVTILLRGESGT
GKELFAHAIHNASDRKYNKFIRVNCAAIPETLLESELFGYEEGAFSGARRGGKRGLFEEANNGSIFLDEIGELSASTQAK
LLRVLQEREIVRVGGTKPIPINVRVIAATNVNLEKAIADGTFREDLYYRLNRMPIYIPPLRARKEDIPALCRHLIQKLNQ
DYGRNVEGVTNEAMARLLAYDWPGNVRELENVLGRAMIFMKFHEVMIDVEHLPPLATPSPTTVSRVEAEEPLRPLDEMVG
EYEARLLERALRRYHGNKTATARALGISVRNLYYKLEKYGLDKKSMQ

Specific function: Member Of The Two-Component Regulatory System Atos/Atoc Involved In The Transcriptional Regulation Of The Ato Genes For Acetoacetate Metabolism. Also An Inhibitor Of Polyamine Biosynthesis. [C]

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=344, Percent_Identity=45.3488372093023, Blast_Score=278, Evalue=8e-76,
Organism=Escherichia coli, GI87082117, Length=336, Percent_Identity=42.2619047619048, Blast_Score=264, Evalue=1e-71,
Organism=Escherichia coli, GI1789087, Length=325, Percent_Identity=42.1538461538462, Blast_Score=256, Evalue=3e-69,
Organism=Escherichia coli, GI1790437, Length=311, Percent_Identity=42.7652733118971, Blast_Score=250, Evalue=2e-67,
Organism=Escherichia coli, GI1789233, Length=457, Percent_Identity=34.7921225382932, Blast_Score=250, Evalue=3e-67,
Organism=Escherichia coli, GI1786524, Length=357, Percent_Identity=38.0952380952381, Blast_Score=244, Evalue=9e-66,
Organism=Escherichia coli, GI1788905, Length=312, Percent_Identity=43.2692307692308, Blast_Score=241, Evalue=9e-65,
Organism=Escherichia coli, GI1790299, Length=406, Percent_Identity=36.4532019704434, Blast_Score=241, Evalue=1e-64,
Organism=Escherichia coli, GI87082152, Length=322, Percent_Identity=39.4409937888199, Blast_Score=217, Evalue=2e-57,
Organism=Escherichia coli, GI1787583, Length=324, Percent_Identity=37.3456790123457, Blast_Score=204, Evalue=2e-53,
Organism=Escherichia coli, GI87081872, Length=318, Percent_Identity=37.4213836477987, Blast_Score=190, Evalue=3e-49,
Organism=Escherichia coli, GI87081858, Length=588, Percent_Identity=25.3401360544218, Blast_Score=161, Evalue=2e-40,
Organism=Escherichia coli, GI1789828, Length=241, Percent_Identity=36.5145228215768, Blast_Score=135, Evalue=8e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR002197
- InterPro:   IPR016040
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 76315; Mature: 76315

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVIIIGADARGTSLLKLLHEASGFAVMAVIDVDDNAPGLQLARKWGIVAANDWRPWMD
CCEEEEEECCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHCCCEEECCCCCCCC
KPLDLIIETTGRADVLEEIRQLAPKGANIVPSAVARMMAELVEEKEALIAELKSEATRRA
CCCEEEEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
LIFHSSHDGMIVVDEYAYITDMNESAAELLEVDKDKVIGEHILSVLPSSGLPRVLKTRQT
EEEECCCCCEEEEECEEEEECCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHH
EFHQEVELANGKKLITTRIPIIDESGKLFGALAVFKDITELVALAEEITDLKEMRMMLEA
HHHHHHHHCCCCEEEEEECCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIHSSEEAISVVDENGNGILINPAYTRLTGLTKEEVIGKPATADIAEGESMHMQVLKTRR
HHHCCCCCEEEEECCCCEEEECCHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCC
PVRGVRMKVGPKNRDVVVNVAPIIVDGVLKGSVGVIHDVSEIQRLTAELNRARQIIRTLE
CCCCCEEEECCCCCCEEEEEHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHH
AKYSFADIIGEADEMKVAIEQAKLAAKTPVTILLRGESGTGKELFAHAIHNASDRKYNKF
HHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCE
IRVNCAAIPETLLESELFGYEEGAFSGARRGGKRGLFEEANNGSIFLDEIGELSASTQAK
EEEEHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCEEEECHHCCCCHHHHH
LLRVLQEREIVRVGGTKPIPINVRVIAATNVNLEKAIADGTFREDLYYRLNRMPIYIPPL
HHHHHHHCCEEEECCCCCCEEEEEEEEEECCCHHHHHHCCCHHHHHHHHHCCCCEEECCC
RARKEDIPALCRHLIQKLNQDYGRNVEGVTNEAMARLLAYDWPGNVRELENVLGRAMIFM
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
KFHEVMIDVEHLPPLATPSPTTVSRVEAEEPLRPLDEMVGEYEARLLERALRRYHGNKTA
HHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
TARALGISVRNLYYKLEKYGLDKKSMQ
HHHHHHHHHHHHHHHHHHHCCCHHCCC
>Mature Secondary Structure
MKKVIIIGADARGTSLLKLLHEASGFAVMAVIDVDDNAPGLQLARKWGIVAANDWRPWMD
CCEEEEEECCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHCCCEEECCCCCCCC
KPLDLIIETTGRADVLEEIRQLAPKGANIVPSAVARMMAELVEEKEALIAELKSEATRRA
CCCEEEEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
LIFHSSHDGMIVVDEYAYITDMNESAAELLEVDKDKVIGEHILSVLPSSGLPRVLKTRQT
EEEECCCCCEEEEECEEEEECCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHH
EFHQEVELANGKKLITTRIPIIDESGKLFGALAVFKDITELVALAEEITDLKEMRMMLEA
HHHHHHHHCCCCEEEEEECCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIHSSEEAISVVDENGNGILINPAYTRLTGLTKEEVIGKPATADIAEGESMHMQVLKTRR
HHHCCCCCEEEEECCCCEEEECCHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCC
PVRGVRMKVGPKNRDVVVNVAPIIVDGVLKGSVGVIHDVSEIQRLTAELNRARQIIRTLE
CCCCCEEEECCCCCCEEEEEHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHH
AKYSFADIIGEADEMKVAIEQAKLAAKTPVTILLRGESGTGKELFAHAIHNASDRKYNKF
HHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCE
IRVNCAAIPETLLESELFGYEEGAFSGARRGGKRGLFEEANNGSIFLDEIGELSASTQAK
EEEEHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCEEEECHHCCCCHHHHH
LLRVLQEREIVRVGGTKPIPINVRVIAATNVNLEKAIADGTFREDLYYRLNRMPIYIPPL
HHHHHHHCCEEEECCCCCCEEEEEEEEEECCCHHHHHHCCCHHHHHHHHHCCCCEEECCC
RARKEDIPALCRHLIQKLNQDYGRNVEGVTNEAMARLLAYDWPGNVRELENVLGRAMIFM
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
KFHEVMIDVEHLPPLATPSPTTVSRVEAEEPLRPLDEMVGEYEARLLERALRRYHGNKTA
HHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
TARALGISVRNLYYKLEKYGLDKKSMQ
HHHHHHHHHHHHHHHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]