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The map label for this gene is yecS [C]

Identifier: 138895922

GI number: 138895922

Start: 2398553

End: 2399173

Strand: Reverse

Name: yecS [C]

Synonym: GTNG_2281

Alternate gene names: 138895922

Gene position: 2399173-2398553 (Counterclockwise)

Preceding gene: 138895923

Following gene: 138895921

Centisome position: 67.58

GC content: 45.73

Gene sequence:

>621_bases
TTGCTATTAATCACATCCGCATTTTTTGCCTTTATTATTGCCATTATCGCAGGATTGGGAAGACTGGCGAAATCGAGATG
GATTCGTTGGACAACCAATATATATGTTGAATTTTTCCGCGGCACATCCTTAGTTGTTCAACTGTTTTGGGTTTATTATG
CCCTGCCCATGCTAGCGAAGGCCATTCCATTTTTGCCGCCGTTAAATCTTTCTTCTTTTTGGGCAGGGGTCATTGCTGTC
TCGCTCAACTATGGAGCCTATGTTTCCGAGACAGTCCGCAGCTGTATTCTCGCTGTGGATCGAGGGCAGCATGAAGCAGC
AATTGCTCTAAATATGACTCGTTTTCAACGGATGAGATTAGTCATTTTGCCGCAAGCGGTGCGAATGATGCTCCCCGATT
TCGGAAACAACTTGATCCAAATGTTAAAATCAACCTCCCTTGTTTCGCTCATTGGATTGACCGATATTACGTATGCGGGA
ATGGTCTTCCGCAACAGTAATATTGATCTGGGGATTCTTGTTTTCGCCATGATGCTTGTGTTCTATTTCCTCATCGCTCT
TCCGCTTATTTGGCTAACCCGGCGTGCGGAACGAGCGGTGTCAAAGGGGATGGCGAGCTAA

Upstream 100 bases:

>100_bases
TCGCATAAAAAGAAGAGGATAGAAAGGGTGATTTGCTATTTCGATTCAAACTATTGTAGAAGTATTCCATATTCTTTCGA
AAGGAATTCAAACGACATTA

Downstream 100 bases:

>100_bases
TGATTTGGGATTGGAATATAGTGAAAGATGTATTTCCGTTAATTTTTCGAGCCATGTGGCTGACGCTGGGGCTTACCTTG
GCTTGTTATGCCGTCTCGTT

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MLLITSAFFAFIIAIIAGLGRLAKSRWIRWTTNIYVEFFRGTSLVVQLFWVYYALPMLAKAIPFLPPLNLSSFWAGVIAV
SLNYGAYVSETVRSCILAVDRGQHEAAIALNMTRFQRMRLVILPQAVRMMLPDFGNNLIQMLKSTSLVSLIGLTDITYAG
MVFRNSNIDLGILVFAMMLVFYFLIALPLIWLTRRAERAVSKGMAS

Sequences:

>Translated_206_residues
MLLITSAFFAFIIAIIAGLGRLAKSRWIRWTTNIYVEFFRGTSLVVQLFWVYYALPMLAKAIPFLPPLNLSSFWAGVIAV
SLNYGAYVSETVRSCILAVDRGQHEAAIALNMTRFQRMRLVILPQAVRMMLPDFGNNLIQMLKSTSLVSLIGLTDITYAG
MVFRNSNIDLGILVFAMMLVFYFLIALPLIWLTRRAERAVSKGMAS
>Mature_206_residues
MLLITSAFFAFIIAIIAGLGRLAKSRWIRWTTNIYVEFFRGTSLVVQLFWVYYALPMLAKAIPFLPPLNLSSFWAGVIAV
SLNYGAYVSETVRSCILAVDRGQHEAAIALNMTRFQRMRLVILPQAVRMMLPDFGNNLIQMLKSTSLVSLIGLTDITYAG
MVFRNSNIDLGILVFAMMLVFYFLIALPLIWLTRRAERAVSKGMAS

Specific function: Probably part of the binding-protein-dependent transport system y4tEFGH for an amino acid. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=183, Percent_Identity=33.879781420765, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1787030, Length=193, Percent_Identity=34.7150259067358, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1788646, Length=207, Percent_Identity=31.8840579710145, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI1786873, Length=168, Percent_Identity=34.5238095238095, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1788645, Length=199, Percent_Identity=32.6633165829146, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1786874, Length=161, Percent_Identity=32.2981366459627, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI87082239, Length=144, Percent_Identity=34.7222222222222, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1787087, Length=150, Percent_Identity=32, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1787086, Length=200, Percent_Identity=28.5, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI48994930, Length=202, Percent_Identity=30.1980198019802, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515
- InterPro:   IPR014342 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23184; Mature: 23184

Theoretical pI: Translated: 10.78; Mature: 10.78

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLITSAFFAFIIAIIAGLGRLAKSRWIRWTTNIYVEFFRGTSLVVQLFWVYYALPMLAK
CEEEHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
AIPFLPPLNLSSFWAGVIAVSLNYGAYVSETVRSCILAVDRGQHEAAIALNMTRFQRMRL
HCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
VILPQAVRMMLPDFGNNLIQMLKSTSLVSLIGLTDITYAGMVFRNSNIDLGILVFAMMLV
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHH
FYFLIALPLIWLTRRAERAVSKGMAS
HHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLLITSAFFAFIIAIIAGLGRLAKSRWIRWTTNIYVEFFRGTSLVVQLFWVYYALPMLAK
CEEEHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
AIPFLPPLNLSSFWAGVIAVSLNYGAYVSETVRSCILAVDRGQHEAAIALNMTRFQRMRL
HCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
VILPQAVRMMLPDFGNNLIQMLKSTSLVSLIGLTDITYAGMVFRNSNIDLGILVFAMMLV
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHH
FYFLIALPLIWLTRRAERAVSKGMAS
HHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]