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The map label for this gene is ypdF [C]

Identifier: 138895913

GI number: 138895913

Start: 2388496

End: 2389680

Strand: Reverse

Name: ypdF [C]

Synonym: GTNG_2272

Alternate gene names: 138895913

Gene position: 2389680-2388496 (Counterclockwise)

Preceding gene: 138895914

Following gene: 138895912

Centisome position: 67.31

GC content: 40.93

Gene sequence:

>1185_bases
ATGTCATTTAGCATAGCTGAGTATAAAGAGAGAATAAGGAAAACAAAAGAAGAAATGGCTAAAAAGGGGATCGAAGTTTT
ACTTGTTACCGATCCGGCCAATATGAATTACTTATCTGGCTATGATGGATGGTCGTTTTATGTACATCAAATGCTTGTCA
TTATCGATGAAGAGGAACAACCGATTTGGATTGGGCGAGGACAAGATGCGAATGCTGCAAAAATAACAACTTGGATTTAT
CACGAAAATATTATTCCTTATCCAGATGATTATGTACAGTCTGAAACAAAACATCCTATGGACTTTGTAGCCGATATTCT
AAGACAAATTGGACAAGATAAACGTTCCATCGGCGTAGAAATGGATAATTATTACTTCACGGCTAAATGTTATGAACGCT
TAAAGCAAGGGTTGCCTAACGCTTCGTTTAAAGATGCAACACTTTTAGTCAATTGGGTTCGCATTGTGAAATCGGATACA
GAAATTGAGTATATGAAGCGGGCTGCTAAAATTGCTGAGAAAGCCATGATGGCGGGAATCGAATTAATCGCCGAAGGCGT
TCGGGAATGTGATGTGGCTGCGAAAATTTTCCACACACAAATTACGGGAACGGAAGAGTTTGGCGGTGACTATCCAGCCA
TTGTCCCATTGCTCCCTTCAGGGGAGAAAACGTCCACCCCTCACTTAACATGGACAGATGAACGTTACAAAAAAGGCGAC
ACCGTCATTATAGAATTGGCAGGATGTTATAAACGTTACCACTCGCCGCTTGCTAGAACAGTCAATATTGGCAAACCTTC
TGATCAAGTAAAAATGCTTTCTGACGTCGTACTAGAAGGAATCAATGCTTGCCTTCACATGATTAAACCTGGTATTACGT
GTGAGGAAATCGAGGAAACGTGGAGAAAAACCATTGAGAAGAGCGGGATTGTCAAAGATTCACGTCTTGGCTATTCCGTT
GGATTGAATTATCCGCCAGATTGGGGTGAACATACAGCAAGCATCCGTAAAGGGGATAAAACCATTTTGCAGCCAAATAT
GACGTTCCATCTGATTCCAGGAGTTTGGCTTGATGACTACGGATTTGAGGTCAGTGAAGCCATCCGGGTAACGGAAAACG
GCTGTGAAACATTTGCATCAATTCCAAGGAAATTATTTATCAAGGATGATATATTAATCGGTTAA

Upstream 100 bases:

>100_bases
AGATGATAAATATTTCCCTGTTTTACTATAATAAGCTTAACAATTGATTGTTTTTAAAATTCTAACAAATGATAAAACAG
GAAGGAGAGGAAGCATTCGG

Downstream 100 bases:

>100_bases
TTTGGAATTTAGCGAGGTGAATCGAACGAATGATCATTTTTACAGAATCAGAACTTAAGCAATATGTTCAATTAAATTTG
GAGGCTATATCTATTATCGA

Product: Xaa-Pro aminopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MSFSIAEYKERIRKTKEEMAKKGIEVLLVTDPANMNYLSGYDGWSFYVHQMLVIIDEEEQPIWIGRGQDANAAKITTWIY
HENIIPYPDDYVQSETKHPMDFVADILRQIGQDKRSIGVEMDNYYFTAKCYERLKQGLPNASFKDATLLVNWVRIVKSDT
EIEYMKRAAKIAEKAMMAGIELIAEGVRECDVAAKIFHTQITGTEEFGGDYPAIVPLLPSGEKTSTPHLTWTDERYKKGD
TVIIELAGCYKRYHSPLARTVNIGKPSDQVKMLSDVVLEGINACLHMIKPGITCEEIEETWRKTIEKSGIVKDSRLGYSV
GLNYPPDWGEHTASIRKGDKTILQPNMTFHLIPGVWLDDYGFEVSEAIRVTENGCETFASIPRKLFIKDDILIG

Sequences:

>Translated_394_residues
MSFSIAEYKERIRKTKEEMAKKGIEVLLVTDPANMNYLSGYDGWSFYVHQMLVIIDEEEQPIWIGRGQDANAAKITTWIY
HENIIPYPDDYVQSETKHPMDFVADILRQIGQDKRSIGVEMDNYYFTAKCYERLKQGLPNASFKDATLLVNWVRIVKSDT
EIEYMKRAAKIAEKAMMAGIELIAEGVRECDVAAKIFHTQITGTEEFGGDYPAIVPLLPSGEKTSTPHLTWTDERYKKGD
TVIIELAGCYKRYHSPLARTVNIGKPSDQVKMLSDVVLEGINACLHMIKPGITCEEIEETWRKTIEKSGIVKDSRLGYSV
GLNYPPDWGEHTASIRKGDKTILQPNMTFHLIPGVWLDDYGFEVSEAIRVTENGCETFASIPRKLFIKDDILIG
>Mature_393_residues
SFSIAEYKERIRKTKEEMAKKGIEVLLVTDPANMNYLSGYDGWSFYVHQMLVIIDEEEQPIWIGRGQDANAAKITTWIYH
ENIIPYPDDYVQSETKHPMDFVADILRQIGQDKRSIGVEMDNYYFTAKCYERLKQGLPNASFKDATLLVNWVRIVKSDTE
IEYMKRAAKIAEKAMMAGIELIAEGVRECDVAAKIFHTQITGTEEFGGDYPAIVPLLPSGEKTSTPHLTWTDERYKKGDT
VIIELAGCYKRYHSPLARTVNIGKPSDQVKMLSDVVLEGINACLHMIKPGITCEEIEETWRKTIEKSGIVKDSRLGYSVG
LNYPPDWGEHTASIRKGDKTILQPNMTFHLIPGVWLDDYGFEVSEAIRVTENGCETFASIPRKLFIKDDILIG

Specific function: Unknown

COG id: COG0006

COG function: function code E; Xaa-Pro aminopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24 family [H]

Homologues:

Organism=Escherichia coli, GI1788728, Length=261, Percent_Identity=25.6704980842912, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1789275, Length=286, Percent_Identity=26.9230769230769, Blast_Score=75, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR000994 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 44737; Mature: 44606

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFSIAEYKERIRKTKEEMAKKGIEVLLVTDPANMNYLSGYDGWSFYVHQMLVIIDEEEQ
CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEECCCCCHHHHHHHHEEEEECCCC
PIWIGRGQDANAAKITTWIYHENIIPYPDDYVQSETKHPMDFVADILRQIGQDKRSIGVE
CEEEECCCCCCCCEEEEEEEECCCCCCCCHHHCCCCCCCHHHHHHHHHHHCCCHHHCCCE
MDNYYFTAKCYERLKQGLPNASFKDATLLVNWVRIVKSDTEIEYMKRAAKIAEKAMMAGI
ECCEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
ELIAEGVRECDVAAKIFHTQITGTEEFGGDYPAIVPLLPSGEKTSTPHLTWTDERYKKGD
HHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCEEEEECCCCCCCCCCCEEECHHHHCCCC
TVIIELAGCYKRYHSPLARTVNIGKPSDQVKMLSDVVLEGINACLHMIKPGITCEEIEET
EEEEEHHHHHHHHCCHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
WRKTIEKSGIVKDSRLGYSVGLNYPPDWGEHTASIRKGDKTILQPNMTFHLIPGVWLDDY
HHHHHHHCCCCCCCCCCEEECCCCCCCCCHHHHHHHCCCCEEECCCCEEEECCCCEECCC
GFEVSEAIRVTENGCETFASIPRKLFIKDDILIG
CCCHHHHHHHHHHHHHHHHHCCHHEEECCCEECC
>Mature Secondary Structure 
SFSIAEYKERIRKTKEEMAKKGIEVLLVTDPANMNYLSGYDGWSFYVHQMLVIIDEEEQ
CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEECCCCCHHHHHHHHEEEEECCCC
PIWIGRGQDANAAKITTWIYHENIIPYPDDYVQSETKHPMDFVADILRQIGQDKRSIGVE
CEEEECCCCCCCCEEEEEEEECCCCCCCCHHHCCCCCCCHHHHHHHHHHHCCCHHHCCCE
MDNYYFTAKCYERLKQGLPNASFKDATLLVNWVRIVKSDTEIEYMKRAAKIAEKAMMAGI
ECCEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
ELIAEGVRECDVAAKIFHTQITGTEEFGGDYPAIVPLLPSGEKTSTPHLTWTDERYKKGD
HHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCEEEEECCCCCCCCCCCEEECHHHHCCCC
TVIIELAGCYKRYHSPLARTVNIGKPSDQVKMLSDVVLEGINACLHMIKPGITCEEIEET
EEEEEHHHHHHHHCCHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
WRKTIEKSGIVKDSRLGYSVGLNYPPDWGEHTASIRKGDKTILQPNMTFHLIPGVWLDDY
HHHHHHHCCCCCCCCCCEEECCCCCCCCCHHHHHHHCCCCEEECCCCEEEECCCCEECCC
GFEVSEAIRVTENGCETFASIPRKLFIKDDILIG
CCCHHHHHHHHHHHHHHHHHCCHHEEECCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]