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The map label for this gene is scpB

Identifier: 138895859

GI number: 138895859

Start: 2342409

End: 2343038

Strand: Reverse

Name: scpB

Synonym: GTNG_2218

Alternate gene names: 138895859

Gene position: 2343038-2342409 (Counterclockwise)

Preceding gene: 138895860

Following gene: 138895858

Centisome position: 66.0

GC content: 53.33

Gene sequence:

>630_bases
ATGGAACAACAGGAAACAGTAAAAAAAGATGATGCCAGCTCAGCACGTCCAGCGAAGGCGATCGTTGAAGCGTTGCTGTT
TGCTGCTGGTGATGAGGGGCTGTCGCTCGCTCAAATCGCTGCCGTACTCGATGTCGATGAATCGGAGGCGAAAGCGGTAA
TCGCAGCGCTGCAAGAAGATTATAGCCGGGAAGAACGCGGCATTCAGCTTATGGAGCTGGCGGGTGTGTTTTTGCTGGCA
ACAAAAAAAGAGCATGCTTCGTATTTAAAAAAGCTCGTTGAGGCACCTGGAGCGTCATCACTGTCGCAGGCGGCGCTTGA
GACGTTGGCCATCATCGCTTATCGTCAGCCGATTACGCGTGCGGAAATCGAGGAAATTCGCGGCGTGAAAAGCGACAAGC
CGCTGCAAACGCTGATGGCTCGGGCGCTCATTAAAGAGGTCGGGCGCGCCGAAGGAACTGGGCGGCCGATTTTGTACGGC
ACGACGGCGGAATTTCTTGACTATTTCGGGCTAAAAACACTCGAGGAGCTACCTCCATTGCCGGAGTGGGCGGATGATGG
CGAGCTCGAACGGGAAGCAGATTTGTTTTTTGAGAAATTGGCAGAAAATTTGAGCGACGAGAAGCCGTAA

Upstream 100 bases:

>100_bases
GGGACGTTGTGGGGAACGATGCTGCTCCGGCGGCCGGTGGAAACGGATAGAAAGGAGGAACGGTTGCGCCAGCTAGAAAC
GCTTGGTGCGGCAAAGCGCG

Downstream 100 bases:

>100_bases
TATGGTAAACTAAAGAAAAAACGGCTGATCGGGAAGGGGTGCGCTCATGGACGTTTGCCGCTTGTACGGTGAAGAGCTGC
AAAAATCACGTTCCAACACG

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MEQQETVKKDDASSARPAKAIVEALLFAAGDEGLSLAQIAAVLDVDESEAKAVIAALQEDYSREERGIQLMELAGVFLLA
TKKEHASYLKKLVEAPGASSLSQAALETLAIIAYRQPITRAEIEEIRGVKSDKPLQTLMARALIKEVGRAEGTGRPILYG
TTAEFLDYFGLKTLEELPPLPEWADDGELEREADLFFEKLAENLSDEKP

Sequences:

>Translated_209_residues
MEQQETVKKDDASSARPAKAIVEALLFAAGDEGLSLAQIAAVLDVDESEAKAVIAALQEDYSREERGIQLMELAGVFLLA
TKKEHASYLKKLVEAPGASSLSQAALETLAIIAYRQPITRAEIEEIRGVKSDKPLQTLMARALIKEVGRAEGTGRPILYG
TTAEFLDYFGLKTLEELPPLPEWADDGELEREADLFFEKLAENLSDEKP
>Mature_209_residues
MEQQETVKKDDASSARPAKAIVEALLFAAGDEGLSLAQIAAVLDVDESEAKAVIAALQEDYSREERGIQLMELAGVFLLA
TKKEHASYLKKLVEAPGASSLSQAALETLAIIAYRQPITRAEIEEIRGVKSDKPLQTLMARALIKEVGRAEGTGRPILYG
TTAEFLDYFGLKTLEELPPLPEWADDGELEREADLFFEKLAENLSDEKP

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SCPB_GEOTN (A4IQG3)

Other databases:

- EMBL:   CP000557
- RefSeq:   YP_001126312.1
- ProteinModelPortal:   A4IQG3
- SMR:   A4IQG3
- STRING:   A4IQG3
- GeneID:   4967145
- GenomeReviews:   CP000557_GR
- KEGG:   gtn:GTNG_2218
- NMPDR:   fig|420246.5.peg.2126
- eggNOG:   COG1386
- HOGENOM:   HBG752450
- OMA:   NILEEMQ
- ProtClustDB:   CLSK712857
- BioCyc:   GTHE420246:GTNG_2218-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01804
- InterPro:   IPR005234
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PIRSF:   PIRSF019345
- TIGRFAMs:   TIGR00281

Pfam domain/function: PF04079 DUF387

EC number: NA

Molecular weight: Translated: 22861; Mature: 22861

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQQETVKKDDASSARPAKAIVEALLFAAGDEGLSLAQIAAVLDVDESEAKAVIAALQED
CCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
YSREERGIQLMELAGVFLLATKKEHASYLKKLVEAPGASSLSQAALETLAIIAYRQPITR
HHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHH
AEIEEIRGVKSDKPLQTLMARALIKEVGRAEGTGRPILYGTTAEFLDYFGLKTLEELPPL
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHCCCC
PEWADDGELEREADLFFEKLAENLSDEKP
CCCCCCCCCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEQQETVKKDDASSARPAKAIVEALLFAAGDEGLSLAQIAAVLDVDESEAKAVIAALQED
CCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
YSREERGIQLMELAGVFLLATKKEHASYLKKLVEAPGASSLSQAALETLAIIAYRQPITR
HHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHH
AEIEEIRGVKSDKPLQTLMARALIKEVGRAEGTGRPILYGTTAEFLDYFGLKTLEELPPL
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHCCCC
PEWADDGELEREADLFFEKLAENLSDEKP
CCCCCCCCCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA