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The map label for this gene is xerC [C]

Identifier: 138895723

GI number: 138895723

Start: 2212552

End: 2213283

Strand: Reverse

Name: xerC [C]

Synonym: GTNG_2079

Alternate gene names: 138895723

Gene position: 2213283-2212552 (Counterclockwise)

Preceding gene: 138895724

Following gene: 138895722

Centisome position: 62.34

GC content: 41.8

Gene sequence:

>732_bases
ATGTATCTCGCTGAGGAGCGCAAGAATAACCCAGTGTCCCTAAACACGAAACGAAAACTTATGAGCGTATTTTTTAACTT
CCTCATTTCAGAGGGACTCCTCAATGGTGACAACCCAGTGAAACAACTCAAGAAAGCCAAGGAGGAGAAAACTCTCAAGA
CATTAACTGATGAGGAGGTAAATTCCCTCATTGCTTGGTTAAAACGTCAAAAGAGACGCAATAACAGCTTTTATACTGTC
AGAGATTACACCATATTTGTGACGCTACTCGGAACTGGAATGAGACTTGGCGAGCTATGCAACCTCAAATGGGAGGACAT
TGATTTCTCGAGCCAGAGAGCAAAAATCTTTGGCAAGGCTCGCAAGGTTGAGACAATTCCACTTAATAGCAAGCTCCTCT
CCGAGTTGGCTCTCTGGAAGGAATATAGCTCAGACTCTCTAGGAAAGCTCCCAGAGTACGTATTTACAAACATAAAGGGA
GAACGTCTCGGGGAGAATGGAACAAAGCAAGTTTTTAAACGACTCACGAATGAAACTGGTATTAAAGTTTCACCTCATAT
GCTCAGACATACATTTGCTCGCAAGTTTATTGAGTCTGGAGGAGACGTTTCTGTTTTAAGTAAGCTCCTCAGACATAGCT
CCATAAAAACGACAGAGATTTATCTACATTACTTCAGCAACACTCTCAAAGACATGAACGAGGCGCATAACCCTCTCAAT
AACTTAATTTAA

Upstream 100 bases:

>100_bases
TATGAGCTGTTATTTTCTGATTTCATGAGCTGGACAGAGAAAGAGGGAATAAAAACCATTCAAGAGGTGACTCCTCGGGT
ATTAAAAAATTACTTTATTT

Downstream 100 bases:

>100_bases
GGAGGAGAAGAGCATGAAGATAAATACTCAGCTTTTGAATGCCATTTTAGAGGTATTAAATGAGTTAGACTACAAACTCG
ATGACAATTCAACAATTTCC

Product: integrase-recombinase protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MYLAEERKNNPVSLNTKRKLMSVFFNFLISEGLLNGDNPVKQLKKAKEEKTLKTLTDEEVNSLIAWLKRQKRRNNSFYTV
RDYTIFVTLLGTGMRLGELCNLKWEDIDFSSQRAKIFGKARKVETIPLNSKLLSELALWKEYSSDSLGKLPEYVFTNIKG
ERLGENGTKQVFKRLTNETGIKVSPHMLRHTFARKFIESGGDVSVLSKLLRHSSIKTTEIYLHYFSNTLKDMNEAHNPLN
NLI

Sequences:

>Translated_243_residues
MYLAEERKNNPVSLNTKRKLMSVFFNFLISEGLLNGDNPVKQLKKAKEEKTLKTLTDEEVNSLIAWLKRQKRRNNSFYTV
RDYTIFVTLLGTGMRLGELCNLKWEDIDFSSQRAKIFGKARKVETIPLNSKLLSELALWKEYSSDSLGKLPEYVFTNIKG
ERLGENGTKQVFKRLTNETGIKVSPHMLRHTFARKFIESGGDVSVLSKLLRHSSIKTTEIYLHYFSNTLKDMNEAHNPLN
NLI
>Mature_243_residues
MYLAEERKNNPVSLNTKRKLMSVFFNFLISEGLLNGDNPVKQLKKAKEEKTLKTLTDEEVNSLIAWLKRQKRRNNSFYTV
RDYTIFVTLLGTGMRLGELCNLKWEDIDFSSQRAKIFGKARKVETIPLNSKLLSELALWKEYSSDSLGKLPEYVFTNIKG
ERLGENGTKQVFKRLTNETGIKVSPHMLRHTFARKFIESGGDVSVLSKLLRHSSIKTTEIYLHYFSNTLKDMNEAHNPLN
NLI

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules [H]

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=230, Percent_Identity=27.3913043478261, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1789261, Length=244, Percent_Identity=27.4590163934426, Blast_Score=89, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 28052; Mature: 28052

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLAEERKNNPVSLNTKRKLMSVFFNFLISEGLLNGDNPVKQLKKAKEEKTLKTLTDEEV
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
NSLIAWLKRQKRRNNSFYTVRDYTIFVTLLGTGMRLGELCNLKWEDIDFSSQRAKIFGKA
HHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHH
RKVETIPLNSKLLSELALWKEYSSDSLGKLPEYVFTNIKGERLGENGTKQVFKRLTNETG
HHEEECCCCHHHHHHHHHHHHCCCCCHHCCHHHHHHCCCCHHCCCCHHHHHHHHHHCCCC
IKVSPHMLRHTFARKFIESGGDVSVLSKLLRHSSIKTTEIYLHYFSNTLKDMNEAHNPLN
CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHH
NLI
HCC
>Mature Secondary Structure
MYLAEERKNNPVSLNTKRKLMSVFFNFLISEGLLNGDNPVKQLKKAKEEKTLKTLTDEEV
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
NSLIAWLKRQKRRNNSFYTVRDYTIFVTLLGTGMRLGELCNLKWEDIDFSSQRAKIFGKA
HHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHH
RKVETIPLNSKLLSELALWKEYSSDSLGKLPEYVFTNIKGERLGENGTKQVFKRLTNETG
HHEEECCCCHHHHHHHHHHHHCCCCCHHCCHHHHHHCCCCHHCCCCHHHHHHHHHHCCCC
IKVSPHMLRHTFARKFIESGGDVSVLSKLLRHSSIKTTEIYLHYFSNTLKDMNEAHNPLN
CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHH
NLI
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA