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The map label for this gene is sdpR [H]

Identifier: 138895674

GI number: 138895674

Start: 2147865

End: 2148347

Strand: Reverse

Name: sdpR [H]

Synonym: GTNG_2030

Alternate gene names: 138895674

Gene position: 2148347-2147865 (Counterclockwise)

Preceding gene: 138895675

Following gene: 138895673

Centisome position: 60.51

GC content: 45.55

Gene sequence:

>483_bases
ATGAACAAATCCGTGAGCCAGTTTTGCCCTTCACTTAGGTATGAAAATGCCCCGCTTTTACAGACATTTTGCGGTTCACC
TGGGCGTGCCATGCTTTACGGCCAACCGTCAACATTGGCAGCATCTGCTCACTGTTTGAGAAGCGGCGATCAACAAACGT
TATTTTTCAATATGTATGCAAAAATCATTCGCAAGGTGGGATCACCATTGTCGTTCAACGAGGCATTTAAAGCGATCGCT
GATCCGACGCGCCGAAAAATTTTAACGTTGCTGCGAACAGGGGACTTGACGGCAGGGGAAATCGCTTCGCACTTTGATAT
GCAAAAACCGAGTGTATCGCATCATTTGAAAATTTTAAAGCAGGCTGATTTGGTGCAAGACCGGCGTGAAGGACAGTATA
TATACTACTCTCTGAACACGACGGTGTTTCAAGATTTGCTCCGTTGGTTTTACGATTTCGTCGAAAAAGGGGGAGAGAAA
TGA

Upstream 100 bases:

>100_bases
CTATAAAACTATGTTTCGAAATAACGAGTGACCGATGCACGAAAAAAGCCTATGAGCCAGTTGTACTCCTCATGTCGGCC
TCAAAGGTGCATGTCTTTTC

Downstream 100 bases:

>100_bases
TGAAGGTTAGCCGGCTGGCGATCGTGTTGACGGTTCTCGCTTATCTATTGAGTTTGGCTGCTCTTCCGTATTTGCCGGAT
GAAGTGGCGATCCATTGGAA

Product: ArsR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MNKSVSQFCPSLRYENAPLLQTFCGSPGRAMLYGQPSTLAASAHCLRSGDQQTLFFNMYAKIIRKVGSPLSFNEAFKAIA
DPTRRKILTLLRTGDLTAGEIASHFDMQKPSVSHHLKILKQADLVQDRREGQYIYYSLNTTVFQDLLRWFYDFVEKGGEK

Sequences:

>Translated_160_residues
MNKSVSQFCPSLRYENAPLLQTFCGSPGRAMLYGQPSTLAASAHCLRSGDQQTLFFNMYAKIIRKVGSPLSFNEAFKAIA
DPTRRKILTLLRTGDLTAGEIASHFDMQKPSVSHHLKILKQADLVQDRREGQYIYYSLNTTVFQDLLRWFYDFVEKGGEK
>Mature_160_residues
MNKSVSQFCPSLRYENAPLLQTFCGSPGRAMLYGQPSTLAASAHCLRSGDQQTLFFNMYAKIIRKVGSPLSFNEAFKAIA
DPTRRKILTLLRTGDLTAGEIASHFDMQKPSVSHHLKILKQADLVQDRREGQYIYYSLNTTVFQDLLRWFYDFVEKGGEK

Specific function: Represses the transcription of the sdpIR operon and of several other operons that probably contribute to delaying commitment to sporulation [H]

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 18161; Mature: 18161

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKSVSQFCPSLRYENAPLLQTFCGSPGRAMLYGQPSTLAASAHCLRSGDQQTLFFNMYA
CCCCHHHHCCCCCCCCCCHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCCCHHHHHHHH
KIIRKVGSPLSFNEAFKAIADPTRRKILTLLRTGDLTAGEIASHFDMQKPSVSHHLKILK
HHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHH
QADLVQDRREGQYIYYSLNTTVFQDLLRWFYDFVEKGGEK
HHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNKSVSQFCPSLRYENAPLLQTFCGSPGRAMLYGQPSTLAASAHCLRSGDQQTLFFNMYA
CCCCHHHHCCCCCCCCCCHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCCCHHHHHHHH
KIIRKVGSPLSFNEAFKAIADPTRRKILTLLRTGDLTAGEIASHFDMQKPSVSHHLKILK
HHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHH
QADLVQDRREGQYIYYSLNTTVFQDLLRWFYDFVEKGGEK
HHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]