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The map label for this gene is yiaM [C]

Identifier: 138895523

GI number: 138895523

Start: 1998404

End: 1998991

Strand: Reverse

Name: yiaM [C]

Synonym: GTNG_1873

Alternate gene names: 138895523

Gene position: 1998991-1998404 (Counterclockwise)

Preceding gene: 138895524

Following gene: 138895522

Centisome position: 56.3

GC content: 47.79

Gene sequence:

>588_bases
TTGTTAAGAAGAATCGGGAAAATATTAGATACCACGTTGAATGTATTGATGGCGGTAGCGCTTGCCTTTATGTGTATTTT
AGTATTCGGCAACGTTGTGTTGCGGTACGGATTCAACTCCGGTATCACCTGGTCGGAAGAAATGTCTCGCTTCCTTTTTA
TTTGGCTGTCGTTTTTTGGAGCTATTGGTGCTTTAAAGGATAACAACCATTTGGGCGTCGACATCTTGCTGAAGAAACTA
CCGCCCCGCGCCAAGCAGGTTGTTTTTATCATCAGCAATGCCATCATCCTTTACGTGCTCTACTTGCTTCTTGACGGAAG
CTGGAAAATTACGCTCAGCAGTATCGGAAGCCGGGCTCCGGCGACCGGCTTGCCGATGGCGTTTATTTATGGAACCGGGC
TTGTCGTGAGTATTGGCATGGGCATCGTCACTTTGTTTCATATTTATCAGGCGCTGTTTCGTCCCGAAGCGATTGATGAG
CTGACGAGAATGAAAGAATCGGAAGAAGAAATCATCGCCGTTGCTCACAGTGAGGCAACAGAGCTGCCACAGGAACGAAA
ACAGGACGCCGTTGGAGGTGAGAGGTAG

Upstream 100 bases:

>100_bases
ATGATGAGCTGTTCAAGAAATACGATTGGGCCGAAGACCTGTATAAGAGAATCAAAGCAGAGGCGAAATAAACCAGGCTA
CAGTTAAAAGGGTGATTAAA

Downstream 100 bases:

>100_bases
ATGGCGTTAGTTGTGTTTATCGGATCGCTCCTTGGCGTGATGGCGATCGGGATGCCGATTGCGTTTGCGTTGCTCGTCAG
CGGGGTTGCACTCATGTTTT

Product: ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MLRRIGKILDTTLNVLMAVALAFMCILVFGNVVLRYGFNSGITWSEEMSRFLFIWLSFFGAIGALKDNNHLGVDILLKKL
PPRAKQVVFIISNAIILYVLYLLLDGSWKITLSSIGSRAPATGLPMAFIYGTGLVVSIGMGIVTLFHIYQALFRPEAIDE
LTRMKESEEEIIAVAHSEATELPQERKQDAVGGER

Sequences:

>Translated_195_residues
MLRRIGKILDTTLNVLMAVALAFMCILVFGNVVLRYGFNSGITWSEEMSRFLFIWLSFFGAIGALKDNNHLGVDILLKKL
PPRAKQVVFIISNAIILYVLYLLLDGSWKITLSSIGSRAPATGLPMAFIYGTGLVVSIGMGIVTLFHIYQALFRPEAIDE
LTRMKESEEEIIAVAHSEATELPQERKQDAVGGER
>Mature_195_residues
MLRRIGKILDTTLNVLMAVALAFMCILVFGNVVLRYGFNSGITWSEEMSRFLFIWLSFFGAIGALKDNNHLGVDILLKKL
PPRAKQVVFIISNAIILYVLYLLLDGSWKITLSSIGSRAPATGLPMAFIYGTGLVVSIGMGIVTLFHIYQALFRPEAIDE
LTRMKESEEEIIAVAHSEATELPQERKQDAVGGER

Specific function: Unknown

COG id: COG3090

COG function: function code G; TRAP-type C4-dicarboxylate transport system, small permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TRAP transporter small permease family [H]

Homologues:

Organism=Escherichia coli, GI1790002, Length=148, Percent_Identity=34.4594594594595, Blast_Score=100, Evalue=6e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007387 [H]

Pfam domain/function: PF04290 DctQ [H]

EC number: NA

Molecular weight: Translated: 21650; Mature: 21650

Theoretical pI: Translated: 7.61; Mature: 7.61

Prosite motif: PS00041 HTH_ARAC_FAMILY_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRRIGKILDTTLNVLMAVALAFMCILVFGNVVLRYGFNSGITWSEEMSRFLFIWLSFFG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
AIGALKDNNHLGVDILLKKLPPRAKQVVFIISNAIILYVLYLLLDGSWKITLSSIGSRAP
HHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHCCCCCC
ATGLPMAFIYGTGLVVSIGMGIVTLFHIYQALFRPEAIDELTRMKESEEEIIAVAHSEAT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHH
ELPQERKQDAVGGER
HCHHHHHHHCCCCCC
>Mature Secondary Structure
MLRRIGKILDTTLNVLMAVALAFMCILVFGNVVLRYGFNSGITWSEEMSRFLFIWLSFFG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
AIGALKDNNHLGVDILLKKLPPRAKQVVFIISNAIILYVLYLLLDGSWKITLSSIGSRAP
HHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHCCCCCC
ATGLPMAFIYGTGLVVSIGMGIVTLFHIYQALFRPEAIDELTRMKESEEEIIAVAHSEAT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHH
ELPQERKQDAVGGER
HCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]