Click here to switch to the map view.

The map label for this gene is gerKA [H]

Identifier: 138895133

GI number: 138895133

Start: 1553192

End: 1554817

Strand: Direct

Name: gerKA [H]

Synonym: GTNG_1471

Alternate gene names: 138895133

Gene position: 1553192-1554817 (Clockwise)

Preceding gene: 138895131

Following gene: 138895134

Centisome position: 43.75

GC content: 52.03

Gene sequence:

>1626_bases
ATGTTGTTTCAATGGGGGATGCGTCGGCAAAAAAAACAGATGAACGACGGTGTGCAGCAAGAAGGCGACGACCATAGCGG
TGAAGTGGCGGATGTCCCACAAGAGCCAATGTCAGCTGAACTGGCGGTGAACATCGACATCATCCGGCGGGCGACCGGAG
AAAGCGACGATGTCGTCATTCGCCGTTTTTCCCTCGGCCAGGAAAAGCAAATGAAAGCAGCCGTTGTCTTTGTTGACGGG
CTCGTTGATGAAAAAAACGTGTACGAGTTTTTGCTCACGCCGCTGCTTACGGCGTCTTTTCCGCTCGCACTCGAGGAAAA
AGAGCGATTGCAATGGATCGAACAAAAGCTCGCTGCGGTTGGCGGAGTGAAGCATGTTGCTGACTGGAAACTACTGTTTT
GCGAGTTGTTTTCCGGAGCGACGGTAATGATGATTGATGGGACATCGTTTGCCATTTGCGCGAGCACGAAAGGCGGACAA
TACCGTTCGATTGAAGAACCGCAAACGCAAATCGCTGTTCGTGGACCACGTGAAGGGTTTACGGAATCATTGCGCACGAA
TACAGCGATGATCCGCCGCCGCATCAAAAACCCGAACCTTTGGCTTGAGACGATGCAAATCGGCACGGTGACGCAAACCG
ATGTGGCTATCATGTATGTAAAAGGGATCGCCAATGACGAAATCATCGAGGAAGTGAAGAAGCGCCTTCGCCGCATCGAT
ATTGATGGTGTGCTCGAGTCCGGCTATATCGAACAATTGATTGAAGATCAGACGTTCACGCCGTTTCCAACTACTTATCA
TACGGAACGGCCCGATATTGTCGCCGCTAATTTGCTTGAAGGGCGGGTCGCCATTTTTGTTGAAGGGACACCGTTTGTCC
TTGTTGCACCAGCATTGTTTATTCAGTTTTTTCAAGCGGTCGAAGACTACTACGCTCGCTTTGATATTGCAACGGCTCTT
CGCTTTTTGCGCGTACTCATTTTTTTTATTTCACTTGTCGCACCAGCAGCCTACATCGCTGGGACAATGTTTCATCAGGA
GATGATTCCGACTCTGCTCGTGATTGCCATTGCTGCCCAGCGTGAGGCGGTGCCGTTTCCGGCGTTCGTTGAGGCGCTCA
TTATGGAAGTGACGTTTGAAATTTTGCGCGAAGCGGGCATCCGCTTGCCGCGCGCCGTTGGCCAGGCGGTATCGATTGTC
GGAGCGCTTGTCATCGGTCAGGCGGCGGTTGAGGCCGGTTTAGTATCGTCAGCAATGGTGATCGTCGTTTCAATTACGGC
TATCGCCAGCTTTGCGACGCCATCGTTTGCTATTGCCATCTCGGCGCGGCTCATCCGGTTTGCTCTCATGTTTTTGGCGG
CGATGTTCGGGTTTTACGGCATTATGATGGGTCTTTTGGTCATGACGATTCATCTGTGCAGCTTACGTTCGTTCGGCGTC
CCGTACATGTCGCCGCTTGCTCCGTTTATGCCGTCGAATATGGGTGATACGCTGTTTCGTCTCCCGACATGGATGTTTCG
TGAGCGGCCTCGTCTTATCAGCCAAAAAAATATCGTTCGGCAATCAGGCGATCAAAAGCCACAGCAGCCAACGCCGTCAC
GCCAAGGGAAGGGGGATGAGTCATGA

Upstream 100 bases:

>100_bases
TGTTCACCGGCTAGGGAGGAATGATGCACCCTCGTATATACTTTTGCCCGATTGCCTATAATGGAGGATAAAAGTGCCAT
GAAGCAAGGAGGAGAGGGGC

Downstream 100 bases:

>100_bases
AACGGGCCTTCGCCCTTTTTATATCACTCACCGCCTATGTTTGTTTGCTTGCGGGTTGCTGGAGTCAAAGAGAACTGACT
GATTTGGCGTTTGTCATTGC

Product: spore germination protein GerKA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 541; Mature: 541

Protein sequence:

>541_residues
MLFQWGMRRQKKQMNDGVQQEGDDHSGEVADVPQEPMSAELAVNIDIIRRATGESDDVVIRRFSLGQEKQMKAAVVFVDG
LVDEKNVYEFLLTPLLTASFPLALEEKERLQWIEQKLAAVGGVKHVADWKLLFCELFSGATVMMIDGTSFAICASTKGGQ
YRSIEEPQTQIAVRGPREGFTESLRTNTAMIRRRIKNPNLWLETMQIGTVTQTDVAIMYVKGIANDEIIEEVKKRLRRID
IDGVLESGYIEQLIEDQTFTPFPTTYHTERPDIVAANLLEGRVAIFVEGTPFVLVAPALFIQFFQAVEDYYARFDIATAL
RFLRVLIFFISLVAPAAYIAGTMFHQEMIPTLLVIAIAAQREAVPFPAFVEALIMEVTFEILREAGIRLPRAVGQAVSIV
GALVIGQAAVEAGLVSSAMVIVVSITAIASFATPSFAIAISARLIRFALMFLAAMFGFYGIMMGLLVMTIHLCSLRSFGV
PYMSPLAPFMPSNMGDTLFRLPTWMFRERPRLISQKNIVRQSGDQKPQQPTPSRQGKGDES

Sequences:

>Translated_541_residues
MLFQWGMRRQKKQMNDGVQQEGDDHSGEVADVPQEPMSAELAVNIDIIRRATGESDDVVIRRFSLGQEKQMKAAVVFVDG
LVDEKNVYEFLLTPLLTASFPLALEEKERLQWIEQKLAAVGGVKHVADWKLLFCELFSGATVMMIDGTSFAICASTKGGQ
YRSIEEPQTQIAVRGPREGFTESLRTNTAMIRRRIKNPNLWLETMQIGTVTQTDVAIMYVKGIANDEIIEEVKKRLRRID
IDGVLESGYIEQLIEDQTFTPFPTTYHTERPDIVAANLLEGRVAIFVEGTPFVLVAPALFIQFFQAVEDYYARFDIATAL
RFLRVLIFFISLVAPAAYIAGTMFHQEMIPTLLVIAIAAQREAVPFPAFVEALIMEVTFEILREAGIRLPRAVGQAVSIV
GALVIGQAAVEAGLVSSAMVIVVSITAIASFATPSFAIAISARLIRFALMFLAAMFGFYGIMMGLLVMTIHLCSLRSFGV
PYMSPLAPFMPSNMGDTLFRLPTWMFRERPRLISQKNIVRQSGDQKPQQPTPSRQGKGDES
>Mature_541_residues
MLFQWGMRRQKKQMNDGVQQEGDDHSGEVADVPQEPMSAELAVNIDIIRRATGESDDVVIRRFSLGQEKQMKAAVVFVDG
LVDEKNVYEFLLTPLLTASFPLALEEKERLQWIEQKLAAVGGVKHVADWKLLFCELFSGATVMMIDGTSFAICASTKGGQ
YRSIEEPQTQIAVRGPREGFTESLRTNTAMIRRRIKNPNLWLETMQIGTVTQTDVAIMYVKGIANDEIIEEVKKRLRRID
IDGVLESGYIEQLIEDQTFTPFPTTYHTERPDIVAANLLEGRVAIFVEGTPFVLVAPALFIQFFQAVEDYYARFDIATAL
RFLRVLIFFISLVAPAAYIAGTMFHQEMIPTLLVIAIAAQREAVPFPAFVEALIMEVTFEILREAGIRLPRAVGQAVSIV
GALVIGQAAVEAGLVSSAMVIVVSITAIASFATPSFAIAISARLIRFALMFLAAMFGFYGIMMGLLVMTIHLCSLRSFGV
PYMSPLAPFMPSNMGDTLFRLPTWMFRERPRLISQKNIVRQSGDQKPQQPTPSRQGKGDES

Specific function: Involved in the germination response to the combination of glucose, fructose, L-asparagine, and KCl [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004995 [H]

Pfam domain/function: PF03323 GerA [H]

EC number: NA

Molecular weight: Translated: 60194; Mature: 60194

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFQWGMRRQKKQMNDGVQQEGDDHSGEVADVPQEPMSAELAVNIDIIRRATGESDDVVI
CCCHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHCCCCCCCEEE
RRFSLGQEKQMKAAVVFVDGLVDEKNVYEFLLTPLLTASFPLALEEKERLQWIEQKLAAV
EEECCCCHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
GGVKHVADWKLLFCELFSGATVMMIDGTSFAICASTKGGQYRSIEEPQTQIAVRGPREGF
CCHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEECCCHHHH
TESLRTNTAMIRRRIKNPNLWLETMQIGTVTQTDVAIMYVKGIANDEIIEEVKKRLRRID
HHHHHHHHHHHHHHHCCCCEEEEEEEECCEECCCEEEEEEECCCCHHHHHHHHHHHHHCC
IDGVLESGYIEQLIEDQTFTPFPTTYHTERPDIVAANLLEGRVAIFVEGTPFVLVAPALF
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEEECCCCHHHHHHHHH
IQFFQAVEDYYARFDIATALRFLRVLIFFISLVAPAAYIAGTMFHQEMIPTLLVIAIAAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
REAVPFPAFVEALIMEVTFEILREAGIRLPRAVGQAVSIVGALVIGQAAVEAGLVSSAMV
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVVSITAIASFATPSFAIAISARLIRFALMFLAAMFGFYGIMMGLLVMTIHLCSLRSFGV
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PYMSPLAPFMPSNMGDTLFRLPTWMFRERPRLISQKNIVRQSGDQKPQQPTPSRQGKGDE
CCHHHHCCCCCCCCCCHHHHCCHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
S
C
>Mature Secondary Structure
MLFQWGMRRQKKQMNDGVQQEGDDHSGEVADVPQEPMSAELAVNIDIIRRATGESDDVVI
CCCHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHCCCCCCCEEE
RRFSLGQEKQMKAAVVFVDGLVDEKNVYEFLLTPLLTASFPLALEEKERLQWIEQKLAAV
EEECCCCHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
GGVKHVADWKLLFCELFSGATVMMIDGTSFAICASTKGGQYRSIEEPQTQIAVRGPREGF
CCHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEECCCHHHH
TESLRTNTAMIRRRIKNPNLWLETMQIGTVTQTDVAIMYVKGIANDEIIEEVKKRLRRID
HHHHHHHHHHHHHHHCCCCEEEEEEEECCEECCCEEEEEEECCCCHHHHHHHHHHHHHCC
IDGVLESGYIEQLIEDQTFTPFPTTYHTERPDIVAANLLEGRVAIFVEGTPFVLVAPALF
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEEECCCCHHHHHHHHH
IQFFQAVEDYYARFDIATALRFLRVLIFFISLVAPAAYIAGTMFHQEMIPTLLVIAIAAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
REAVPFPAFVEALIMEVTFEILREAGIRLPRAVGQAVSIVGALVIGQAAVEAGLVSSAMV
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVVSITAIASFATPSFAIAISARLIRFALMFLAAMFGFYGIMMGLLVMTIHLCSLRSFGV
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PYMSPLAPFMPSNMGDTLFRLPTWMFRERPRLISQKNIVRQSGDQKPQQPTPSRQGKGDE
CCHHHHCCCCCCCCCCHHHHCCHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
S
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]